diff options
| author | Sukanka | 2022-06-06 22:07:36 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 22:07:36 +0800 |
| commit | de47e339adce31a5273ba3808686c9e4f5a56821 (patch) | |
| tree | 5bc90ab3fdf1318de29ec683f521cbbc7775deae /PKGBUILD | |
| download | aur-de47e339adce31a5273ba3808686c9e4f5a56821.tar.gz | |
add r-scate
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..dd9562bf6e90 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,40 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=SCATE +_pkgver=1.6.0 +pkgname=r-${_pkgname,,} +pkgver=1.6.0 +pkgrel=1 +pkgdesc='SCATE: Single-cell ATAC-seq Signal Extraction and Enhancement' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('MIT') +depends=( + r + r-genomicalignments + r-genomicranges + r-mclust + r-preprocesscore + r-rtsne + r-scatedata + r-splines2 + r-xgboost +) +optdepends=( + r-ggplot2 + r-knitr + r-rmarkdown +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('d069e53dac4e22b3ff876840c7388565fbba5db110d0e550939d0f50872ff593') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" +} +# vim:set ts=2 sw=2 et: |