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authorSukanka2022-06-06 22:07:36 +0800
committerSukanka2022-06-06 22:07:36 +0800
commitde47e339adce31a5273ba3808686c9e4f5a56821 (patch)
tree5bc90ab3fdf1318de29ec683f521cbbc7775deae /PKGBUILD
downloadaur-de47e339adce31a5273ba3808686c9e4f5a56821.tar.gz
add r-scate
Diffstat (limited to 'PKGBUILD')
-rw-r--r--PKGBUILD40
1 files changed, 40 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD
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+++ b/PKGBUILD
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+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=SCATE
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=1.6.0
+pkgrel=1
+pkgdesc='SCATE: Single-cell ATAC-seq Signal Extraction and Enhancement'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+ r
+ r-genomicalignments
+ r-genomicranges
+ r-mclust
+ r-preprocesscore
+ r-rtsne
+ r-scatedata
+ r-splines2
+ r-xgboost
+)
+optdepends=(
+ r-ggplot2
+ r-knitr
+ r-rmarkdown
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('d069e53dac4e22b3ff876840c7388565fbba5db110d0e550939d0f50872ff593')
+
+build() {
+ R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+ install -dm0755 "${pkgdir}/usr/lib/R/library"
+ cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+ install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: