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authorSukanka2022-06-06 22:11:37 +0800
committerSukanka2022-06-06 22:11:37 +0800
commit2c64bb6e80c3f8a9413a8eaada6ea2f357df2e67 (patch)
tree9605a2bb2b4a367b15d85666b5760e375c65e782 /PKGBUILD
downloadaur-2c64bb6e80c3f8a9413a8eaada6ea2f357df2e67.tar.gz
add r-sccb2
Diffstat (limited to 'PKGBUILD')
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1 files changed, 45 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD
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+# system requirements: C++11
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=scCB2
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=1.6.0
+pkgrel=1
+pkgdesc='CB2 improves power of cell detection in droplet-based single-cell RNA sequencing data'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+ r
+ r-doparallel
+ r-dropletutils
+ r-edger
+ r-foreach
+ r-iterators
+ r-rhdf5
+ r-seurat
+ r-singlecellexperiment
+ r-summarizedexperiment
+ gcc
+)
+optdepends=(
+ r-beachmat
+ r-biocstyle
+ r-kernsmooth
+ r-knitr
+ r-rmarkdown
+ r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('050ef27eb813a89d4a3c8347c82ddf1fc84f8dc007ea03579e82ab7807a99356')
+
+build() {
+ R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+ install -dm0755 "${pkgdir}/usr/lib/R/library"
+ cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: