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author | Sukanka | 2022-06-06 22:11:37 +0800 |
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committer | Sukanka | 2022-06-06 22:11:37 +0800 |
commit | 2c64bb6e80c3f8a9413a8eaada6ea2f357df2e67 (patch) | |
tree | 9605a2bb2b4a367b15d85666b5760e375c65e782 /PKGBUILD | |
download | aur-2c64bb6e80c3f8a9413a8eaada6ea2f357df2e67.tar.gz |
add r-sccb2
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 45 |
1 files changed, 45 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..0e0044248773 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,45 @@ +# system requirements: C++11 +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=scCB2 +_pkgver=1.6.0 +pkgname=r-${_pkgname,,} +pkgver=1.6.0 +pkgrel=1 +pkgdesc='CB2 improves power of cell detection in droplet-based single-cell RNA sequencing data' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-doparallel + r-dropletutils + r-edger + r-foreach + r-iterators + r-rhdf5 + r-seurat + r-singlecellexperiment + r-summarizedexperiment + gcc +) +optdepends=( + r-beachmat + r-biocstyle + r-kernsmooth + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('050ef27eb813a89d4a3c8347c82ddf1fc84f8dc007ea03579e82ab7807a99356') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |