add r-scpca

1 files changed, 58 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..86af38a5efb2
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,58 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=scPCA
+_pkgver=1.10.0
+pkgname=r-${_pkgname,,}
+pkgver=1.10.0
+pkgrel=1
+pkgdesc='Sparse Contrastive Principal Component Analysis'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-assertthat
+  r-biocparallel
+  r-coop
+  r-delayedarray
+  r-dplyr
+  r-elasticnet
+  r-kernlab
+  r-matrixgenerics
+  r-matrixstats
+  r-origami
+  r-purrr
+  r-rdpack
+  r-rspectra
+  r-scaledmatrix
+  r-sparsepca
+  r-stringr
+  r-tibble
+)
+optdepends=(
+  r-biocstyle
+  r-covr
+  r-delayedmatrixstats
+  r-ggplot2
+  r-ggpubr
+  r-knitr
+  r-microbenchmark
+  r-rmarkdown
+  r-singlecellexperiment
+  r-sparsematrixstats
+  r-splatter
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('a05fd3377c085ce2525d41a7303ba17f91c0a1ee6f0f3eaba2714be170f845c5')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: