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| author | BioArchLinuxBot | 2023-01-13 18:03:00 +0000 |
|---|---|---|
| committer | BioArchLinuxBot | 2023-01-13 18:03:00 +0000 |
| commit | 50480db485a15576db1bccb14ac4c897e69b2972 (patch) | |
| tree | fef95fa95d54a54b206c90d88a4e0cbbda04438c /PKGBUILD | |
| parent | 3bcb361e42bbc805a7b3ffd31818b87230f62c82 (diff) | |
| download | aur-50480db485a15576db1bccb14ac4c897e69b2972.tar.gz | |
[lilac] updated to 1.20.4-1
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 42 |
1 files changed, 35 insertions, 7 deletions
@@ -2,54 +2,82 @@ # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=scPipe -_pkgver=1.20.2 +_pkgver=1.20.4 pkgname=r-${_pkgname,,} -pkgver=1.20.2 +pkgver=1.20.4 pkgrel=1 pkgdesc='pipeline for single cell RNA-seq data analysis' arch=('x86_64') url="https://bioconductor.org/packages/${_pkgname}" license=('GPL') depends=( + gcc + make r r-annotationdbi + r-basilisk r-biocgenerics r-biomart + r-biostrings + r-data.table r-dplyr + r-dropletutils + r-flexmix + r-genomicalignments r-genomicranges r-ggally r-ggplot2 r-glue r-hash + r-iranges r-magrittr r-mclust + r-multiassayexperiment r-org.hs.eg.db r-org.mm.eg.db + r-purrr r-rcpp r-reshape + r-reticulate r-rhtslib r-rlang r-robustbase + r-rsamtools + r-rsubread r-rtracklayer r-s4vectors r-scales - r-scater r-singlecellexperiment r-stringr r-summarizedexperiment r-testthat + r-tibble + r-tidyr r-zlibbioc - gcc - make ) optdepends=( + r-biocstyle + r-dt + r-genomicfeatures + r-grid + r-igraph + r-kableextra r-knitr + r-locstra + r-plotly + r-rann + r-rcolorbrewer + r-readr + r-reshape2 r-rmarkdown - r-rsubread + r-scater + r-shiny r-testthat + r-umap + r-xml2 ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('68a58e3edc68f8d299c816a6764bb2a864a45c072a345fb9bf140c4e1664c0e3') +sha256sums=('36219e26515a818aaf577207a184b4b826530b0bb8b5ded40bc84d08f751bfb3') build() { R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" |