diff options
| author | Sukanka | 2022-06-06 22:31:28 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 22:31:28 +0800 |
| commit | b2cd921a7598fc7150f2df25e8d3f473ea462135 (patch) | |
| tree | 023b07cb90f3084fb1a909538695d29983918f6f /PKGBUILD | |
| download | aur-b2cd921a7598fc7150f2df25e8d3f473ea462135.tar.gz | |
add r-segmenter
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..2eaed5d276fb --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,41 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=segmenter +_pkgver=1.2.0 +pkgname=r-${_pkgname,,} +pkgver=1.2.0 +pkgrel=1 +pkgdesc='Perform Chromatin Segmentation Analysis in R by Calling ChromHMM' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-bamsignals + r-chipseeker + r-chromhmmdata + r-complexheatmap + r-genomicranges + r-iranges + r-s4vectors + r-summarizedexperiment +) +optdepends=( + r-gviz + r-knitr + r-rmarkdown + r-testthat + r-txdb.hsapiens.ucsc.hg18.knowngene +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('5372daaa1ad1a0b0941b37225f3cd760dad302528f1e132749aea036a4e96de0') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |