add r-shinyepico

1 files changed, 60 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..d5298fc9e377
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,60 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=shinyepico
+_pkgver=1.4.2
+pkgname=r-${_pkgname,,}
+pkgver=1.4.2
+pkgrel=3
+pkgdesc='ShinyÉPICo'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('AGPL')
+depends=(
+  r
+  r-data.table
+  r-doparallel
+  r-dplyr
+  r-dt
+  r-foreach
+  r-genomicranges
+  r-ggplot2
+  r-gplots
+  r-heatmaply
+  r-limma
+  r-minfi
+  r-plotly
+  r-reshape2
+  r-rlang
+  r-rmarkdown
+  r-rtracklayer
+  r-shiny
+  r-shinycssloaders
+  r-shinyjs
+  r-shinythemes
+  r-shinywidgets
+  r-statmod
+  r-tidyr
+  r-zip
+)
+optdepends=(
+  r-illuminahumanmethylation450kanno.ilmn12.hg19
+  r-illuminahumanmethylation450kmanifest
+  r-illuminahumanmethylationepicanno.ilm10b4.hg19
+  r-illuminahumanmethylationepicmanifest
+  r-knitr
+  r-mcsea
+  r-minfidata
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('3574dac3c4b082cdaec74238154244fbf21aa3c54a78c0f02e26ad81759d06df')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: