add r-singscore

1 files changed, 48 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..150ca4fbb029
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,48 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=singscore
+_pkgver=1.16.0
+pkgname=r-${_pkgname,,}
+pkgver=1.16.0
+pkgrel=1
+pkgdesc='Rank-based single-sample gene set scoring method'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biobase
+  r-biocparallel
+  r-edger
+  r-ggplot2
+  r-ggrepel
+  r-gseabase
+  r-magrittr
+  r-matrixstats
+  r-plotly
+  r-plyr
+  r-rcolorbrewer
+  r-reshape
+  r-reshape2
+  r-s4vectors
+  r-summarizedexperiment
+  r-tidyr
+)
+optdepends=(
+  r-hexbin
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('1942589b3946670fae86b1c4a1c06307d178d1d1d3f4fb6947f7ca95f665d64a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: