add r-snapcount

1 files changed, 50 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..3a785c02c88f
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,50 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=snapcount
+_pkgver=1.8.0
+pkgname=r-${_pkgname,,}
+pkgver=1.8.0
+pkgrel=1
+pkgdesc='R/Bioconductor Package for interfacing with Snaptron for rapid querying of expression counts'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-assertthat
+  r-data.table
+  r-genomicranges
+  r-httr
+  r-iranges
+  r-jsonlite
+  r-magrittr
+  r-purrr
+  r-r6
+  r-rlang
+  r-stringr
+  r-summarizedexperiment
+)
+optdepends=(
+  r-biocmanager
+  r-biocstyle
+  r-bit64
+  r-covr
+  r-devtools
+  r-knitcitations
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('cab20a756a8bcc2f73c2719370f4c5d0b8a74c89cfabe2ae872ed0cfb7820736')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: