add r-timirgen

1 files changed, 54 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..cb3162ed776c
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,54 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=TimiRGeN
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=1.6.0
+pkgrel=1
+pkgdesc='Time sensitive microRNA-mRNA integration, analysis and network generation tool'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biomart
+  r-clusterprofiler
+  r-dplyr
+  r-freqprof
+  r-ggdendro
+  r-gghighlight
+  r-ggplot2
+  r-gplots
+  r-gtools
+  r-igraph
+  r-mfuzz
+  r-multiassayexperiment
+  r-rcy3
+  r-readxl
+  r-reshape2
+  r-rwikipathways
+  r-scales
+  r-stringr
+  r-tidyr
+)
+optdepends=(
+  r-biocmanager
+  r-kableextra
+  r-knitr
+  r-org.hs.eg.db
+  r-org.mm.eg.db
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('7eeb5dcc263ad5ff29073176a64db05ab4eddc51708c655c53cd6d34d2041af5')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: