add r-topconfects

1 files changed, 46 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..82cc4569f6db
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,46 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=topconfects
+_pkgver=1.12.0
+pkgname=r-${_pkgname,,}
+pkgver=1.12.0
+pkgrel=1
+pkgdesc='Top Confident Effect Sizes'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('LGPL')
+depends=(
+  r
+  r-assertthat
+  r-ggplot2
+)
+optdepends=(
+  r-annotationdbi
+  r-ashr
+  r-biocstyle
+  r-deseq2
+  r-dplyr
+  r-edger
+  r-knitr
+  r-limma
+  r-nbpseq
+  r-org.at.tair.db
+  r-readr
+  r-reshape2
+  r-rmarkdown
+  r-statmod
+  r-testthat
+  r-tidyr
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('93bca22f8636f1b3e7259ac63cfa5e019e893de279175f3febb8f1b5dfc12c6c')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: