add r-tradeseq

1 files changed, 51 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..0cbd2cf22cef
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,51 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=tradeSeq
+_pkgver=1.10.0
+pkgname=r-${_pkgname,,}
+pkgver=1.10.0
+pkgrel=1
+pkgdesc='trajectory-based differential expression analysis for sequencing data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-biobase
+  r-biocparallel
+  r-edger
+  r-ggplot2
+  r-igraph
+  r-magrittr
+  r-matrixstats
+  r-pbapply
+  r-princurve
+  r-rcolorbrewer
+  r-s4vectors
+  r-singlecellexperiment
+  r-slingshot
+  r-summarizedexperiment
+  r-tibble
+  r-trajectoryutils
+  r-viridis
+)
+optdepends=(
+  r-clusterexperiment
+  r-covr
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('a0e2749bda610c03468d388ea4ff240a2a88f4dec2b2a87c853819c573c7366d')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: