add r-varcon

1 files changed, 39 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..aa98329ef976
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,39 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=VarCon
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=1.4.0
+pkgrel=1
+pkgdesc='VarCon: an R package for retrieving neighboring nucleotides of an SNV'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biostrings
+  r-bsgenome
+  r-genomicranges
+  r-ggplot2
+  r-iranges
+  r-shiny
+  r-shinycssloaders
+  r-shinyfiles
+)
+optdepends=(
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('1f12f73092c432600bfa0e8e568b6470f5f1bee4ff92a0c5ed73fa0a857e1b50')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: