add r-viseago

1 files changed, 60 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..0430a0a0e5a8
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,60 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=ViSEAGO
+_pkgver=1.10.0
+pkgname=r-${_pkgname,,}
+pkgver=1.10.0
+pkgrel=1
+pkgdesc='ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-annotationdbi
+  r-annotationforge
+  r-biomart
+  r-data.table
+  r-dendextend
+  r-diagrammer
+  r-dt
+  r-dynamictreecut
+  r-fgsea
+  r-ggplot2
+  r-go.db
+  r-gosemsim
+  r-heatmaply
+  r-htmlwidgets
+  r-igraph
+  r-plotly
+  r-processx
+  r-r.utils
+  r-rcolorbrewer
+  r-scales
+  r-topgo
+  r-upsetr
+)
+optdepends=(
+  r-biocmanager
+  r-biocstyle
+  r-corrplot
+  r-htmltools
+  r-knitr
+  r-limma
+  r-org.mm.eg.db
+  r-remotes
+  r-rgraphviz
+  r-rmarkdown
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('cd2c6399b3cf1d3fc1da6f15c92a49e412c768f0d8dd4c4e5fe9abd35840bd68')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: