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author | Pekka Ristola | 2023-12-06 19:12:26 +0200 |
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committer | Pekka Ristola | 2023-12-06 19:12:26 +0200 |
commit | 0cd8d4238d44b18ea02cf71e8caf8efe8ad28abe (patch) | |
tree | f98d342ebf5e014ace8cd403ac7d63349b5ba2a3 /PKGBUILD | |
download | aur-0cd8d4238d44b18ea02cf71e8caf8efe8ad28abe.tar.gz |
Version 1.4.0
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 50 |
1 files changed, 50 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..b7b9e53980c1 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,50 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=vsclust +_pkgver=1.4.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Feature-based variance-sensitive quantitative clustering" +arch=(x86_64) +url="https://bioconductor.org/packages/${_pkgname}" +license=(GPL2) +depends=( + r-limma + r-matrixstats + r-multiassayexperiment + r-qvalue + r-shiny +) +makedepends=( + r-rcpp +) +checkdepends=( + r-testthat +) +optdepends=( + r-biocstyle + r-clusterprofiler + r-knitr + r-rmarkdown + r-testthat + r-yaml +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('0c492a6d65d0b230211a0f95706b51a4') +sha256sums=('3438992407e27098a9304721bbb07d30fb85d3c238bdda0d96a5cca9d0e9748d') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} |