First commit - salmon v0.11.2

1 files changed, 33 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
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+# Maintainer: Thiago L. A. Miller <thiago_leisrael@hotmail.com>
+pkgname=salmon
+pkgver=0.11.2
+pkgrel=1
+pkgdesc="Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments"
+arch=('x86_64')
+url="https://combine-lab.github.io/$pkgname/"
+license=('GPL')
+depends=('boost>=1.55' 'ca-certificates' 'unzip')
+makedepends=('cmake')
+source=("$pkgname-$pkgver.tar.gz"::"https://github.com/COMBINE-lab/$pkgname/archive/v$pkgver.tar.gz")
+md5sums=('d81f083e71adc6d46a21ed14df624136')
+
+build() {
+  cd "$pkgname-$pkgver"
+  cmake \
+    -DCMAKE_COLOR_MAKEFILE:BOOL='ON' \
+    -DCMAKE_INSTALL_PREFIX:PATH='/usr' \
+    -Wno-dev \
+    .
+  make
+}
+
+package() {
+  cd "$pkgname-$pkgver"
+  make DESTDIR="$pkgdir" install
+}
+
+# Local Variables:
+# mode: shell-script
+# sh-basic-offset: 2
+# End:
+# vim:set ts=2 sw=2 et: