[lilac] updated to 3.0.6-1

1 files changed, 15 insertions, 15 deletions

diff --git a/PKGBUILD b/PKGBUILD
index 1fa2efb5cdd8..ee2ce01f1509 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -2,24 +2,24 @@
 # Contributor: sukanka <su975853527 at gmail>
 # Contributor: Aaron Baker <aa{last name}99{at}gmail{dt}org>
 # Contributor: Georgios Amanakis <g_amanakis{at}yahoo{dt}com>
+# Contributor: Guoyi Zhang <myname at malacology dot net>
 
 pkgname=sra-tools
 _dep=ncbi-vdb
-pkgver=3.0.5
-_depver=3.0.5
-pkgrel=2
+pkgver=3.0.6
+pkgrel=1
 pkgdesc='A collection of tools and libraries for using data in the INSDC Sequence Read Archives'
 url="https://github.com/ncbi/sra-tools"
 source=("$pkgname-$pkgver.tar.gz::https://github.com/ncbi/sra-tools/archive/refs/tags/$pkgver.tar.gz"
-        "$_dep-$_depver.tar.gz::https://github.com/ncbi/ncbi-vdb/archive/refs/tags/$_depver.tar.gz")
+        "$_dep-$pkgver.tar.gz::https://github.com/ncbi/ncbi-vdb/archive/refs/tags/$pkgver.tar.gz")
 license=('custom: Public Domain')
 provides=('ncbi-vdb')
 arch=(x86_64)
-depends=('hdf5' 'python' 'mbedtls' 'libxml2' 'glibc' 'gcc-libs')
-optdepends=('python-ngs')
-makedepends=('cmake'  'doxygen' 'java-runtime')
-sha256sums=('6dca9889ca9cfa83e9ce1c39bf7ae5654576fc79c4f608e902272a49573a05e0'
-            'a32672d7f76507a77ceb29f023855eaf5bf4d150ddd21b55c013b499f3b83735')
+depends=('python' 'glibc' 'gcc-libs')
+optdepends=('python-ngs: python module for ncbi sra-tools')
+makedepends=('cmake'  'doxygen' 'java-runtime' 'hdf5' 'mbedtls' 'libxml2')
+sha256sums=('9fecfd819ee9beaf8a1d3e4b76a5d49e747bc064525b40416e0730a168986348'
+            '4b6f93336bf8664fdcc151d41ea0793f0b0f88cfcb7c2aa049f162a72f905223')
 
 prepare(){
   cd ${srcdir}/"$pkgname-$pkgver"
@@ -29,7 +29,7 @@ prepare(){
   sed -i 's|/etc/profile.d/sra-tools|${SRC_DIR}/etc/profile.d/sra-tools|g' build/install.sh
 }
 build(){
-  cd "$_dep-$_depver"
+  cd "$_dep-$pkgver"
   install -d  build1
   cd build1
   cmake .. -DCMAKE_BUILD_TYPE='None' \
@@ -44,23 +44,23 @@ build(){
   cd build1
   cmake .. -DCMAKE_BUILD_TYPE='None' \
         -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_INSTALL_LIBDIR=lib \
-        -DVDB_INCDIR="$srcdir/$_dep-$_depver/interfaces/" \
-        -DVDB_LIBDIR="$srcdir/$_dep-$_depver/build1/lib/" \
+        -DVDB_INCDIR="$srcdir/$_dep-$pkgver/interfaces/" \
+        -DVDB_LIBDIR="$srcdir/$_dep-$pkgver/build1/lib/" \
         -Wno-dev \
         -DCMAKE_SKIP_RPATH=YES
   make
 }
 
 package(){
-  install -d  $srcdir/$_dep-$_depver/interfaces/kfg/ncbi/etc/profile.d/
+  install -d  $srcdir/$_dep-$pkgver/interfaces/kfg/ncbi/etc/profile.d/
 
-  cd "$_dep-$_depver"/build1
+  cd "$_dep-$pkgver"/build1
   make DESTDIR="$pkgdir" install
 
   cd ${srcdir}/"$pkgname-$pkgver"/build1
   make DESTDIR="$pkgdir" install
   cp -rf ${srcdir}/"$pkgname-$pkgver"/etc "$pkgdir"
-  cp -rf $srcdir/$_dep-$_depver/interfaces/kfg/ncbi/etc "$pkgdir"
+  cp -rf $srcdir/$_dep-$pkgver/interfaces/kfg/ncbi/etc "$pkgdir"
 
   # install LICENSE file
   install -Dm644 ${srcdir}/"$pkgname-$pkgver"/LICENSE  -t "$pkgdir"/usr/share/licenses/sra-tools/