diff options
| author | bipin kumar | 2023-02-15 15:45:19 +0530 |
|---|---|---|
| committer | bipin kumar | 2023-02-15 15:45:19 +0530 |
| commit | c88897af65cd86a2baecb66aa2e1d89bf852199c (patch) | |
| tree | e260d034275660fd216d3cc1cb98ded0937f47fe /PKGBUILD | |
| download | aur-c88897af65cd86a2baecb66aa2e1d89bf852199c.tar.gz | |
transtermhp: add version 2.09
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..391ed6d6baf0 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,46 @@ +# Maintainer: bipin kumar <bipin@ccmb.res.in> + +pkgname=transtermhp +pkgver=2.09 +pkgrel=1 +pkgdesc="Find rho-independent transcription terminators in bacterial genomes" +arch=('i686' 'x86_64') +url="http://transterm.cbcb.umd.edu/index.php" +license=('GPL') +depends=('gcc-libs') +makedepends=('quilt') +provides=('2ndscore') +source=("http://transterm.cbcb.umd.edu/transterm_hp_v${pkgver}.zip" + "series" + "0002-read_seq-return-NULL-instead-of-false.patch" + "2to3.patch" + "0003-Don-t-overwrite-CXXFLAGS.patch" + "hardening.patch" + ) +b2sums=('c4553c96dac3c3b06a050d540fca15ad0688cb10e905b3b63c33734e398521a692c759b9d79476acf9241cebb0534b40b96d8a015ccb50edbc59f1888769f470' + 'f17b2afc1ae28d37d1b09de546b992e7064f8aff3400c251242b24bf51fc3ac7eb9abad9043b066655490c0ccab9939320e30d38115c81c2819e0d10f608ad6e' + 'eb798aa12ac2ecc129675cc40c08d0db09a9e66b693aaf04f9ab6b71b6e87eb111187af548b28a6d51068611565c056699e7531d909774e74eaf3f1c696b7ed1' + 'e028abf8bc84dafd879b1a0a9c1281624ee5bc2a6248012a4841c4ad6a782e3bc9c1ec97b31bedeee83bcbc71b6fc966aa3858120cabafd9ca1fc5b65de78cdb' + 'efd9062df280d010277147853f9ebb61fec1985355535746c26b7d9055498a24242dfb5001a2fb4dc7e3a217755b70242f4dd882678bcf2c6986ced8de5522d3' + '013afe630df1ef74dc569f938619ff5b7174f8aabd20cb2362b308ab3684462a9c65f03e78fb29430626b4ca6760f7a99afe1b37e22f5fe3edae83cc9e85bf24') + +prepare (){ + # Copy patches (courtesy debian med project https://launchpad.net/ubuntu/+source/transtermhp/2.09-5) + mkdir -p transterm_hp_v${pkgver}/patches + cp *.patch transterm_hp_v${pkgver}/patches + cp series transterm_hp_v${pkgver}/patches + cd transterm_hp_v${pkgver} + quilt push -a + +} + +build() { + cd transterm_hp_v${pkgver} + make clean transterm 2ndscore +} + +package() { + cd transterm_hp_v${pkgver} + install -D -m755 transterm "$pkgdir"/usr/bin/transterm + install -D -m755 2ndscore "$pkgdir"/usr/bin/2ndscore +} |