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| author | ZJLIN | 2016-03-10 23:23:46 +0800 |
|---|---|---|
| committer | ZJLIN | 2016-03-10 23:23:46 +0800 |
| commit | a2353321bb50310f1d1d265b4ffab21e624880b4 (patch) | |
| tree | c9ec9b6507a12efd6fe91d52b07d6c35130b7323 /PKGBUILD | |
| download | aur-a2353321bb50310f1d1d265b4ffab21e624880b4.tar.gz | |
first commit
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 23 |
1 files changed, 23 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..71d0f4dbb30d --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,23 @@ +# Maintainer: ZJLIN <zjin841126@gmail.com> +pkgname=trimmomatic +pkgver=0.35 +pkgrel=1 +pkgdesc='Trimmomatic: A flexible read trimming tool for Illumina NGS data' +arch=('any') +url="http://www.usadellab.org/cms/?page=trimmomatic" +license=('GPL3') +depends=('java-environment>=6') +source=("http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-$pkgver.zip") +md5sums=('564e62f4f0f9f56d22762b237d4c69c4') + +package() { + mkdir $pkgdir/opt/ + mv $srcdir/Trimmomatic-$pkgver $srcdir/Trimmomatic + cp -r $srcdir/Trimmomatic/ $pkgdir/opt/ + + mkdir -p "${pkgdir}/usr/bin/" + execmd=("exec java -jar $pkgdir/opt/Trimmomatic/trimmomatic-$pkgver.jar"' "$@"') + echo $execmd > $pkgdir/opt/Trimmomatic/trimmomatic + chmod 755 $pkgdir/opt/Trimmomatic/trimmomatic + ln -s "/opt/Trimmomatic/trimmomatic" "${pkgdir}/usr/bin" +} |