Initial import

1 files changed, 41 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..ba79e289c798
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,41 @@
+# Maintainer: Grey Christoforo <grey at christoforo dot net>
+
+pkgname=ucsc-kent-genome-tools
+pkgver=316
+pkgrel=1
+pkgdesc="UCSC genome browser 'kent' bioinformatic utilities"
+arch=('i686' 'x86_64')
+url="http://hgdownload.soe.ucsc.edu/admin/exe/"
+license=other
+install=$pkgname.install
+depends=('mariadb-clients' 'libpng' 'openssl')
+source=(http://hgdownload.soe.ucsc.edu/admin/exe/userApps.v${pkgver}.src.tgz)
+sha1sums=('b9eddc7e7bce7d3f6a2b09d06175b9ebee776764')
+
+build() {
+   cd "${srcdir}/userApps/"
+   make
+}
+
+package() {
+   cd "${srcdir}/userApps/"
+   mkdir -p "${pkgdir}/usr/bin/"
+   mv bin/ "${pkgdir}/usr/bin/kentUtils/"
+
+   mkdir -p "$pkgdir/etc/profile.d"
+   echo "export PATH=/usr/bin/kentUtils:"'$PATH' > "$pkgdir/etc/profile.d/kentUtils.sh"
+
+   mkdir -p "${pkgdir}/opt/kentUtils/"
+cat  > "${pkgdir}/opt/kentUtils/.hg.conf" <<EOF
+db.host=genome-mysql.cse.ucsc.edu
+db.user=genomep
+db.password=password
+central.db=hgcentral
+EOF
+   
+   install -D -m644 licenseUcscGenomeBrowser.txt "${pkgdir}/usr/share/licenses/kentUtils/licenseUcscGenomeBrowser.txt"
+   install -D -m644 GenomeBrowserLicense.pdf "${pkgdir}/usr/share/licenses/kentUtils/GenomeBrowserLicense.pdf"
+   install -D -m644 licenseBlat.txt "${pkgdir}/usr/share/licenses/kentUtils/licenseBlat.txt"
+}
+
+# vim:set ts=2 sw=2 et: