[lilac] updated to 42.0-2

1 files changed, 24 insertions, 9 deletions

diff --git a/PKGBUILD b/PKGBUILD
index c945ac9e4828..f73030e8a2d0 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -3,8 +3,8 @@
 
 _pkgname=ugene
 pkgname=('ugene' 'ugene-cuda')
-pkgver=41.0
-pkgrel=1
+pkgver=42.0
+pkgrel=2
 pkgdesc='A free open-source cross-platform bioinformatics software'
 arch=('x86_64')
 url='http://ugene.net'
@@ -18,36 +18,49 @@ depends=(
 )
 makedepends=(
   cuda
+  gendesk
   qt5-tools
   opencl-headers
 )
 source=("${_pkgname}-${pkgver}.tar.gz::https://github.com/ugeneunipro/ugene/archive/refs/tags/${pkgver}.tar.gz"
-        "ugene.desktop"
+        # "ugene.desktop"
 )
-sha256sums=('eab798354f71d8b21e4dff94e76abc48ca0e59e3d5234bf25d269960ef4be0b9'
-            '5914bc5938dc29f58aeca16233b0bb7dc5271131a3260ed749f9dc009ff3bc03')
+sha256sums=('200159838d2d2a4a701be8fb51b0e00c0ca52c4054d72c42cdd6913bbef56d53')
 
 prepare() {
+  echo "generating desktop file"
+  gendesk -f -n --pkgname ${_pkgname} \
+    --pkgdesc "${pkgdesc}" \
+    --categories "Education;Science" \
+    --icon "${_pkgname}" \
+    --mimetypes "application/x-ugene-fa;application/x-ugene-uprj;application/x-ugene-uwl;application/x-ugene-uql;application/x-ugene-abi;application/x-ugene-aln;application/x-ugene-embl;application/x-ugene-sw;application/x-ugene-fastq;application/x-ugene-gb;application/x-ugene-gff;application/x-ugene-msf;application/x-ugene-newick;application/x-ugene-pdb;application/x-ugene-sam-bam;application/x-ugene-srfa;application/x-ugene-sto;application/x-ugene-db;application/x-ugene-scf;application/x-ugene-mmdb;application/x-ugene-hmm;" \
+    --exec "/opt/ugene/ugeneui"
+
+  sed -i "s#16384#16384l#" "${_pkgname}-${pkgver}/src/libs_3rdparty/breakpad/src/client/linux/handler/exception_handler.cc"
   cp -a ${_pkgname}-${pkgver} ${_pkgname}-cuda-${pkgver}
 }
 
 build() {
   cd "${_pkgname}-${pkgver}"
-  qmake CONFIG+=x64 \
+  qmake \
+    CONFIG+=x64 \
+    PREFIX=/opt/${_pkgname} \
     UGENE_CUDA_DETECTED=0 \
     UGENE_OPENCL_DETECTED=1 \
     UGENE_USE_BUNDLED_ZLIB=0 \
-    UGENE_USE_BUNDLED_SQLITE=0
+    UGENE_USE_SYSTEM_SQLITE=1
   make
   
   cd "${srcdir}/${_pkgname}-cuda-${pkgver}"
   CUDA_LIB_PATH=/opt/cuda/lib64 \
   CUDA_INC_PATH=/opt/cuda/include \
-  qmake CONFIG+=x64 \
+  qmake \
+    CONFIG+=x64 \
+    PREFIX=/opt/${_pkgname} \
     UGENE_CUDA_DETECTED=1 \
     UGENE_OPENCL_DETECTED=1 \
     UGENE_USE_BUNDLED_ZLIB=0 \
-    UGENE_USE_BUNDLED_SQLITE=0
+    UGENE_USE_SYSTEM_SQLITE=1
   CUDA_LIB_PATH=/opt/cuda/lib64 \
   CUDA_INC_PATH=/opt/cuda/include \
   make
@@ -68,6 +81,8 @@ package_ugene-cuda() {
     cuda
 )
   cd "${pkgname}-${pkgver}"
+  CUDA_LIB_PATH=/opt/cuda/lib64 \
+  CUDA_INC_PATH=/opt/cuda/include \
   make INSTALL_ROOT=${pkgdir} install
   install -d "${pkgdir}/usr/share/applications"
   install -Dm644 "${srcdir}/${_pkgname}.desktop" "${pkgdir}/usr/share/applications/${_pkgname}.desktop"