Changes by eDgar: use test_optdepends, remove patch

1 files changed, 139 insertions, 0 deletions

diff --git a/test_optdepends.sh b/test_optdepends.sh
new file mode 100644
index 000000000000..ba074436e88a
--- /dev/null
+++ b/test_optdepends.sh
@@ -0,0 +1,139 @@
+#!/bin/bash
+
+# Test if external packages for PETSC are installed
+
+# CONFOPTS=""
+
+# # External downloads
+# for external_pkg in hypre fblaslapack metis parmetis superlu_dist mumps scalapack; do
+# 	CONFOPTS="${CONFOPTS} --download-${external_pkg}=1"
+# done
+
+# Add hypre support
+if [ -f "/usr/lib/libHYPRE.so" ]; then
+	CONFOPTS="${CONFOPTS} --with-hypre=1"
+fi
+
+# Add mumps support
+if [ -f "/usr/lib/libmumps_common.so" ]; then
+	CONFOPTS="${CONFOPTS} --with-mumps=1"
+fi
+
+# Add fftw support
+if [ -f "/usr/lib/libfftw3_mpi.so" ]; then
+	CONFOPTS="${CONFOPTS} --with-fftw=1"
+fi
+
+# Add hdf5 support
+if [[ "$(h5stat -V)" ]]; then
+	CONFOPTS="${CONFOPTS} --with-hdf5=1"
+fi
+
+# Add scalapack support
+if [ -f "/usr/lib/pkgconfig/scalapack.pc" ]; then
+	CONFOPTS="${CONFOPTS} --with-scalapack=1"
+fi
+
+# Add suitesparse support
+if [ -f "/usr/include/SuiteSparse_config.h" ]; then
+	CONFOPTS="${CONFOPTS} --with-suitesparse=1"
+fi
+
+# Add metis support
+if [ -f "/usr/include/metis.h" ]; then
+	CONFOPTS="${CONFOPTS} --with-metis=1"
+	# Add parmetis support
+	if [ -f "/usr/include/parmetis.h" ]; then
+		CONFOPTS="${CONFOPTS} --with-parmetis=1"
+	fi
+fi
+
+# Add scotch support
+SCOTCH_DIR="/usr/include/scotch"
+if [ -d "${SCOTCH_DIR}" ]; then
+	SCOTCH_LIBS="libesmumps.so,libptscotch.so,libptscotcherr.so,libscotch.so,libscotcherr.so"
+	# Include bzip2 if scotch was build with bzip2 support
+	if [ -f /usr/include/bzlib.h ];then
+		SCOTCH_LIBS="${SCOTCH_LIBS},libbz2.so"
+	fi
+	SCOTCH_LIBS="[${SCOTCH_LIBS}]"
+	CONFOPTS="${CONFOPTS} --with-ptscotch=1 --with-ptscotch-lib=${SCOTCH_LIBS} --with-ptscotch-include=${SCOTCH_DIR}"
+fi
+
+# Add superlu support
+SUPERLU_DIR="/usr/include/superlu"
+if [ -d "${SUPERLU_DIR}" ]; then
+	CONFOPTS="${CONFOPTS} --with-superlu=1 --with-superlu-lib=-lsuperlu --with-superlu-include=${SUPERLU_DIR}"
+fi
+
+# Incompatible with complex
+# # Add sundials support
+# SUNDIALS_DIR="/usr/include/sundials/"
+# if [ -d "${SUNDIALS_DIR}" ]; then
+# 	CONFOPTS="${CONFOPTS} --with-sundials=1 --with-sundials-include=${SUNDIALS_DIR}"
+# fi
+
+# Add openblas support
+if [ -f "/usr/lib/libblas.so" ]; then
+	CONFOPTS="${CONFOPTS} --with-openblas=1"
+fi
+
+# Add OpenCL support
+OPENCL_DIR="/usr/include/CL/"
+if [ -f "${OPENCL_DIR}/cl.h" ]; then
+	CONFOPTS="${CONFOPTS} --with-opencl=1"
+else
+	CONFOPTS="${CONFOPTS} --with-opencl=0"
+fi
+
+# Add eigen support
+EIGEN_DIR="/usr/include/eigen3"
+if [ -d "${EIGEN_DIR}" ]; then
+	CONFOPTS="${CONFOPTS} --with-eigen=1 --with-eigen-include=${EIGEN_DIR}"
+fi
+
+# Add OpenMP support
+if [ -f "/usr/lib/libomp.so" ]; then
+	CONFOPTS="${CONFOPTS} --with-openmp=1"
+fi
+
+# Add hwloc support
+if [ -f "/usr/lib/libhwloc.so" ]; then
+	CONFOPTS="${CONFOPTS} --with-hwloc=1 --with-hwloc-pkg-config=/usr/lib/pkgconfig/"
+fi
+
+# Add CGNS support
+if [ -f "/usr/lib/libcgns.so" ]; then
+	CONFOPTS="${CONFOPTS} --with-cgns=1"
+fi
+
+# Add PNG support
+if [ -f "/usr/lib/libpng.so" ]; then
+	CONFOPTS="${CONFOPTS} --with-png=1 --with-png-pkg-config=/usr/lib/pkgconfig/"
+fi
+
+# Add MED support
+if [ -f "/usr/lib/libmed.so" ]; then
+	CONFOPTS="${CONFOPTS} --with-med=1"
+fi
+
+# # Add pastix support
+# PASTIX_CONF=$(which pastix-conf)
+# if [ -f "${PASTIX_CONF}" ]; then
+# 	PASTIX_DIR="$($PASTIX_CONF --incs | sed 's/-I//')"
+# 	if [ ! -d ${PASTIX_DIR} ]; then
+# 		PASTIX_DIR="[]"
+# 	fi
+# 	#PASTIX_LIBS="$($PASTIX_CONF --libs)"
+# 	PASTIX_LIBS="[libpastix.a,librt.so,libhwloc.so,libpthread.a]"
+# 	CONFOPTS="${CONFOPTS} --with-pastix=1 --with-pastix-lib=${PASTIX_LIBS} --with-pastix-include=${PASTIX_DIR}"
+# fi
+
+# Add trilinos support
+if [ "${TRILINOS_DIR}" ]; then
+	CONFOPTS="${CONFOPTS} --with-ml-dir=${TRILINOS_DIR}"
+	# Add boost support (may be useful for trilinos)
+	CONFOPTS="${CONFOPTS} --with-boost=1"
+fi
+
+echo "${CONFOPTS}"