diff options
Diffstat (limited to '.SRCINFO')
-rw-r--r-- | .SRCINFO | 89 |
1 files changed, 89 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..6b91bb3ee8b1 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,89 @@ +pkgbase = r-granie + pkgdesc = GRaNIE: Reconstruction cell type specific gene regulatory networks including enhancers using chromatin accessibility and RNA-seq data + pkgver = 1.6.1 + pkgrel = 1 + url = https://bioconductor.org/packages/GRaNIE + arch = any + license = Artistic2.0 + depends = r-annotationhub + depends = r-biomart + depends = r-biostrings + depends = r-checkmate + depends = r-circlize + depends = r-colorspace + depends = r-complexheatmap + depends = r-data.table + depends = r-deseq2 + depends = r-dplyr + depends = r-ensembldb + depends = r-forcats + depends = r-futile.logger + depends = r-genomeinfodb + depends = r-genomicranges + depends = r-ggplot2 + depends = r-gridextra + depends = r-igraph + depends = r-limma + depends = r-magrittr + depends = r-matrixstats + depends = r-patchwork + depends = r-progress + depends = r-rcolorbrewer + depends = r-readr + depends = r-reshape2 + depends = r-rlang + depends = r-s4vectors + depends = r-scales + depends = r-stringr + depends = r-summarizedexperiment + depends = r-tibble + depends = r-tidyr + depends = r-tidyselect + depends = r-topgo + depends = r-viridis + optdepends = r-biocfilecache + optdepends = r-biocparallel + optdepends = r-biocstyle + optdepends = r-bsgenome.dmelanogaster.ucsc.dm6 + optdepends = r-bsgenome.hsapiens.ucsc.hg19 + optdepends = r-bsgenome.hsapiens.ucsc.hg38 + optdepends = r-bsgenome.mmulatta.ucsc.rhemac10 + optdepends = r-bsgenome.mmusculus.ucsc.mm10 + optdepends = r-bsgenome.mmusculus.ucsc.mm9 + optdepends = r-bsgenome.rnorvegicus.ucsc.rn6 + optdepends = r-bsgenome.rnorvegicus.ucsc.rn7 + optdepends = r-chipseeker + optdepends = r-clusterprofiler + optdepends = r-csaw + optdepends = r-dose + optdepends = r-edaseq + optdepends = r-ihw + optdepends = r-jaspar2022 + optdepends = r-knitr + optdepends = r-ldlinkr + optdepends = r-motifmatchr + optdepends = r-org.dm.eg.db + optdepends = r-org.hs.eg.db + optdepends = r-org.mm.eg.db + optdepends = r-org.mmu.eg.db + optdepends = r-org.rn.eg.db + optdepends = r-purrr + optdepends = r-rbioapi + optdepends = r-reactomepa + optdepends = r-testthat + optdepends = r-tfbstools + optdepends = r-txdb.dmelanogaster.ucsc.dm6.ensgene + optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene + optdepends = r-txdb.hsapiens.ucsc.hg38.knowngene + optdepends = r-txdb.mmulatta.ucsc.rhemac10.refgene + optdepends = r-txdb.mmusculus.ucsc.mm10.knowngene + optdepends = r-txdb.mmusculus.ucsc.mm9.knowngene + optdepends = r-txdb.rnorvegicus.ucsc.rn6.refgene + optdepends = r-txdb.rnorvegicus.ucsc.rn7.refgene + optdepends = r-variancepartition + optdepends = r-wgcna + source = https://bioconductor.org/packages/release/bioc/src/contrib/GRaNIE_1.6.1.tar.gz + md5sums = d9db703063398ccd263ce6b54def9266 + sha256sums = 681f6cd397a1861871fedcbc84b69e5cfe86db7bb5493bd69d9eb1e2b43d37ed + +pkgname = r-granie |