diff options
Diffstat (limited to '0001-DOC-Skip-BIDSDataGrabber-doctest-if-pybids-is-missin.patch')
| -rw-r--r-- | 0001-DOC-Skip-BIDSDataGrabber-doctest-if-pybids-is-missin.patch | 44 |
1 files changed, 44 insertions, 0 deletions
diff --git a/0001-DOC-Skip-BIDSDataGrabber-doctest-if-pybids-is-missin.patch b/0001-DOC-Skip-BIDSDataGrabber-doctest-if-pybids-is-missin.patch new file mode 100644 index 000000000000..5755cc762750 --- /dev/null +++ b/0001-DOC-Skip-BIDSDataGrabber-doctest-if-pybids-is-missin.patch @@ -0,0 +1,44 @@ +From dc230ef7c9e6261164d66124f82918807473a81d Mon Sep 17 00:00:00 2001 +From: Chris Markiewicz <markiewicz@stanford.edu> +Date: Thu, 4 Jun 2020 13:30:11 -0400 +Subject: [PATCH] DOC: Skip BIDSDataGrabber doctest if pybids is missing + +--- + nipype/conftest.py | 1 + + nipype/interfaces/io.py | 8 ++++++++ + 2 files changed, 9 insertions(+) + +diff --git a/nipype/conftest.py b/nipype/conftest.py +index b099fd007..7323e7284 100644 +--- a/nipype/conftest.py ++++ b/nipype/conftest.py +@@ -17,6 +17,7 @@ shutil.copytree(NIPYPE_DATADIR, data_dir) + def add_np(doctest_namespace): + doctest_namespace["np"] = numpy + doctest_namespace["os"] = os ++ doctest_namespace["pytest"] = pytest + doctest_namespace["datadir"] = data_dir + + +diff --git a/nipype/interfaces/io.py b/nipype/interfaces/io.py +index d9b578caa..2b2510f16 100644 +--- a/nipype/interfaces/io.py ++++ b/nipype/interfaces/io.py +@@ -2895,6 +2895,14 @@ class BIDSDataGrabber(LibraryBaseInterface, IOBase): + + Examples + -------- ++ ++ .. setup:: ++ ++ >>> try: ++ ... import bids ++ ... except ImportError: ++ ... pytest.skip() ++ + By default, the BIDSDataGrabber fetches anatomical and functional images + from a project, and makes BIDS entities (e.g. subject) available for + filtering outputs. +-- +2.27.0 + |