diff options
| -rw-r--r-- | .SRCINFO | 11 | ||||
| -rw-r--r-- | .shellcheckrc | 4 | ||||
| -rw-r--r-- | PKGBUILD | 15 |
3 files changed, 12 insertions, 18 deletions
@@ -1,20 +1,21 @@ pkgbase = abyss pkgdesc = Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler - pkgver = 2.3.6 - pkgrel = 1 + pkgver = 2.3.7 + pkgrel = 2 url = https://github.com/bcgsc/abyss arch = i686 arch = x86_64 license = GPL3 makedepends = boost makedepends = sparsehash - makedepends = make makedepends = btllib depends = openmpi depends = make + depends = sqlite + depends = perl optdepends = pigz: for parallel gzip optdepends = samtools: for reading SAM files - source = abyss-2.3.6.tar.gz::https://github.com/bcgsc/abyss/archive/2.3.6.tar.gz - sha512sums = bc535f2676f6ed9929219680fb301787bffa527892c46f96c10d4e998cd7a7cf88df689f04e3bb4333d4a8ec7f098f6bd45b1a0e20877674d003c7f57eca5268 + source = abyss-2.3.7.tar.gz::https://github.com/bcgsc/abyss/archive/2.3.7.tar.gz + sha512sums = 71fe616724e61174d5034b91de9b0495b7c3d8cd2c3c88981048089003041bab6cad4ff608aac10bcb0846aaac047d73b9d6c2e1f52c0681ac351c5ef5a0831d pkgname = abyss diff --git a/.shellcheckrc b/.shellcheckrc deleted file mode 100644 index 49d6ff1a7a67..000000000000 --- a/.shellcheckrc +++ /dev/null @@ -1,4 +0,0 @@ -disable=SC2034 -disable=SC2154 -disable=SC2148 -disable=SC2164 @@ -3,33 +3,30 @@ # Contributor: Eric Biggers <ebiggers3 at gmail dot com> pkgname=abyss -pkgver=2.3.6 -pkgrel=1 +pkgver=2.3.7 +pkgrel=2 pkgdesc="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler" arch=("i686" "x86_64") url="https://github.com/bcgsc/abyss" license=("GPL3") -depends=("openmpi" "make") -makedepends=("boost" "sparsehash" "make" "btllib") +depends=("openmpi" "make" "sqlite" "perl") +makedepends=("boost" "sparsehash" "btllib") optdepends=( 'pigz: for parallel gzip' 'samtools: for reading SAM files' ) source=("$pkgname-$pkgver.tar.gz::https://github.com/bcgsc/abyss/archive/$pkgver.tar.gz") -sha512sums=('bc535f2676f6ed9929219680fb301787bffa527892c46f96c10d4e998cd7a7cf88df689f04e3bb4333d4a8ec7f098f6bd45b1a0e20877674d003c7f57eca5268') +sha512sums=('71fe616724e61174d5034b91de9b0495b7c3d8cd2c3c88981048089003041bab6cad4ff608aac10bcb0846aaac047d73b9d6c2e1f52c0681ac351c5ef5a0831d') build() { cd "${pkgname}-${pkgver}" ./autogen.sh - ./configure --prefix=/usr --with-boost=/usr/lib --with-mpi=/usr/lib/openmpi --with-sparsehash=/usr/lib --with-btllib=/usr/lib --without-sqlite --disable-werror + ./configure --prefix=/usr --with-mpi=/usr/lib/openmpi --disable-werror make } package() { cd "${pkgname}-${pkgver}" - make DESTDIR="${pkgdir}" install install -Dm644 "LICENSE" "$pkgdir/usr/share/licenses/$pkgname/LICENSE" } - - |