diff options
| -rw-r--r-- | .SRCINFO | 11 | ||||
| -rw-r--r-- | PKGBUILD | 14 |
2 files changed, 18 insertions, 7 deletions
@@ -1,7 +1,7 @@ pkgbase = augustus pkgdesc = A eukaryotic gene prediction program pkgver = 3.5.0 - pkgrel = 4 + pkgrel = 5 url = http://augustus.gobics.de/ arch = i686 arch = x86_64 @@ -18,7 +18,16 @@ pkgbase = augustus depends = lpsolve depends = perl depends = htslib + depends = python-pandas + depends = python-numpy + depends = python-biopython + depends = mariadb-libs + depends = gcc-libs + depends = glibc + depends = bash source = augustus-3.5.0.tar.gz::https://github.com/Gaius-Augustus/Augustus/archive/v3.5.0.tar.gz + source = augustus.patch::https://github.com/Gaius-Augustus/Augustus/pull/395.patch sha256sums = 5ed6ce6106303b800c5e91d37a250baff43b20824657b853ae04d11ad8bdd686 + sha256sums = f6676c6f9e5fade9adaf6a457fd87c9401a5ebc5f6aa4a87037990dd381afd1d pkgname = augustus @@ -1,21 +1,23 @@ -# Maintainer: bipin kumar <bipin@ccmb.res.in> +# Maintainer: bipin kumar <kbipinkumar@pm.me> # Contributor: sukanka <su975853527 at gmail> pkgname=augustus _pkgname=Augustus pkgver=3.5.0 -pkgrel=4 +pkgrel=5 pkgdesc="A eukaryotic gene prediction program" arch=('i686' 'x86_64') url="http://augustus.gobics.de/" license=('custom:Artistic-2.0') -depends=('bamtools' 'boost-libs' 'gsl' 'mysql++' 'sqlite' 'python' 'lpsolve' 'perl' 'htslib') +depends=('bamtools' 'boost-libs' 'gsl' 'mysql++' 'sqlite' 'python' 'lpsolve' 'perl' 'htslib' 'python-pandas' 'python-numpy' 'python-biopython' 'mariadb-libs' 'gcc-libs' 'glibc' 'bash') makedepends=('boost' 'suitesparse' 'samtools' ) -source=($pkgname-$pkgver.tar.gz::https://github.com/Gaius-Augustus/Augustus/archive/v$pkgver.tar.gz) -sha256sums=('5ed6ce6106303b800c5e91d37a250baff43b20824657b853ae04d11ad8bdd686') +source=($pkgname-$pkgver.tar.gz::https://github.com/Gaius-Augustus/Augustus/archive/v$pkgver.tar.gz + "$pkgname.patch::https://github.com/Gaius-Augustus/Augustus/pull/395.patch") +sha256sums=('5ed6ce6106303b800c5e91d37a250baff43b20824657b853ae04d11ad8bdd686' + 'f6676c6f9e5fade9adaf6a457fd87c9401a5ebc5f6aa4a87037990dd381afd1d') prepare() { cd $_pkgname-$pkgver - sed -i "s|/usr/local/bin|/usr/bin|" Makefile + patch -p1 < $srcdir/$pkgname.patch } build() { |