diff options
| -rw-r--r-- | .SRCINFO | 21 | ||||
| -rw-r--r-- | .gitignore | 4 | ||||
| -rw-r--r-- | PKGBUILD | 40 | ||||
| -rw-r--r-- | makefile_uname.patch | 11 |
4 files changed, 30 insertions, 46 deletions
@@ -1,17 +1,14 @@ -# Generated by mksrcinfo v8 -# Fri Jan 5 00:29:10 UTC 2018 pkgbase = bowtie - pkgdesc = Bowtie is an alignment tool for short nucleotide sequences against long templates - pkgver = 1.2.2 - pkgrel = 2 - url = http://bowtie-bio.sf.net + pkgdesc = Alignment tool for short nucleotide sequences against long templates + pkgver = 1.3.1 + pkgrel = 1 + url = https://bowtie-bio.sourceforge.net arch = x86_64 arch = i686 - license = PerlArtistic - source = https://github.com/BenLangmead/bowtie/archive/v1.2.2_p1.tar.gz - source = makefile_uname.patch - sha256sums = e1b02b2e77a0d44a3dd411209fa1f44f0c4ee304ef5cc83f098275085740d5a1 - sha256sums = 6b77e333a3ef10e3f787fd2983afd69cdb48e82347fc3316510c2ba5639742a3 + license = Artistic2.0 + depends = python + depends = perl + source = bowtie-1.3.1.tar.gz::https://github.com/BenLangmead/bowtie/archive/v1.3.1.tar.gz + sha256sums = 147d9fe9652f7c5f351bfc0eb012e06981986fb43bd6bdfe88a95c02eabc6573 pkgname = bowtie - diff --git a/.gitignore b/.gitignore new file mode 100644 index 000000000000..1970994f527a --- /dev/null +++ b/.gitignore @@ -0,0 +1,4 @@ +* +!/.SRCINFO +!/.gitignore +!/PKGBUILD @@ -1,35 +1,29 @@ -# Maintainer: Athemis <alexander.minges[at]googlemail[dot]com> +# Maintainer: a821 +# Contributor: Athemis <alexander.minges[at]googlemail[dot]com> # Contributor: sauliusl + pkgname=bowtie -pkgver=1.2.2 -pkgrel=2 -pkgdesc="Bowtie is an alignment tool for short nucleotide sequences against long templates" -url="http://bowtie-bio.sf.net" +pkgver=1.3.1 +pkgrel=1 +pkgdesc="Alignment tool for short nucleotide sequences against long templates" +url="https://bowtie-bio.sourceforge.net" arch=('x86_64' 'i686') -license=('PerlArtistic') -depends=() -source=("https://github.com/BenLangmead/bowtie/archive/v${pkgver}_p1.tar.gz" - "makefile_uname.patch") -sha256sums=('e1b02b2e77a0d44a3dd411209fa1f44f0c4ee304ef5cc83f098275085740d5a1' - '6b77e333a3ef10e3f787fd2983afd69cdb48e82347fc3316510c2ba5639742a3') +license=('Artistic2.0') +depends=('python' 'perl') +source=("${pkgname}-${pkgver}.tar.gz::https://github.com/BenLangmead/bowtie/archive/v${pkgver}.tar.gz") +sha256sums=('147d9fe9652f7c5f351bfc0eb012e06981986fb43bd6bdfe88a95c02eabc6573') build() { - cd "${srcdir}/${pkgname}-${pkgver}_p1" - patch -Np0 -i ../makefile_uname.patch - make NO_TBB=1 EXTRA_CXXFLAGS="-std=c++03" + cd "${srcdir}/${pkgname}-${pkgver}" + make } package() { - cd "${srcdir}/${pkgname}-${pkgver}_p1" + cd "${srcdir}/${pkgname}-${pkgver}" make prefix=/usr DESTDIR="${pkgdir}" install - install -d ${pkgdir}/usr/share/doc/${pkgname} - install -Dm755 scripts/*.pl "${pkgdir}/usr/bin" - install -Dm755 scripts/*.sh "${pkgdir}/usr/bin" - find doc -type f -exec install -Dm644 "{}" "${pkgdir}/usr/share/doc/${pkgname}" \; - install -Dm644 TUTORIAL "${pkgdir}/usr/share/doc/$pkgname/TUTORIAL" - install -Dm644 MANUAL "$pkgdir/usr/share/doc/$pkgname/MANUAL" - install -Dm644 MANUAL.markdown "$pkgdir/usr/share/doc/$pkgname/MANUAL.markdown" - install -Dm644 LICENSE "$pkgdir/usr/share/licenses/$pkgname/LICENSE" + + install -Dm755 -t "${pkgdir}/usr/share/${pkgname}/scripts/" scripts/*.{pl,sh} + install -Dm644 -t "${pkgdir}/usr/share/doc/$pkgname/" MANUAL{,.markdown} TUTORIAL AUTHORS NEWS } # vim:set ts=2 sw=2 et: diff --git a/makefile_uname.patch b/makefile_uname.patch deleted file mode 100644 index b9833cd6d4db..000000000000 --- a/makefile_uname.patch +++ /dev/null @@ -1,11 +0,0 @@ ---- Makefile 2013-04-18 21:33:44.000000000 +0200 -+++ Makefile 2013-06-26 16:25:17.622402991 +0200 -@@ -107,7 +107,7 @@ - endif - - ifeq (1,$(LINUX)) -- ifeq (x86_64, $(shell uname -p)) -+ ifeq (x86_64, $(shell uname -m)) - BITS=64 - endif - endif |