diff options
| -rw-r--r-- | .SRCINFO | 15 | ||||
| -rw-r--r-- | PKGBUILD | 38 | ||||
| -rw-r--r-- | makefile_uname.patch | 11 |
3 files changed, 64 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..0caa7be4861d --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,15 @@ +pkgbase = bowtie + pkgdesc = Bowtie is an alignment tool for short nucleotide sequences against long templates + pkgver = 1.1.1 + pkgrel = 1 + url = http://bowtie-bio.sf.net + arch = x86_64 + arch = i686 + license = PerlArtistic + source = http://downloads.sourceforge.net/bowtie-bio/bowtie-1.1.1-src.zip + source = makefile_uname.patch + sha256sums = 92aacb2d32065ebee433ce76eff673c24ed12591eb6c20e22ad7e4a790c48f72 + sha256sums = 6b77e333a3ef10e3f787fd2983afd69cdb48e82347fc3316510c2ba5639742a3 + +pkgname = bowtie + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..ec42206cfe4a --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,38 @@ +# Maintainer: Athemis <alexander.minges[at]googlemail[dot]com> +# Contributor: sauliusl +pkgname=bowtie +pkgver=1.1.1 +pkgrel=1 +pkgdesc="Bowtie is an alignment tool for short nucleotide sequences against long templates" +url="http://bowtie-bio.sf.net" +arch=('x86_64' 'i686') +license=('PerlArtistic') +depends=() +source=("http://downloads.sourceforge.net/bowtie-bio/${pkgname}-${pkgver}-src.zip" + "makefile_uname.patch") +sha256sums=('92aacb2d32065ebee433ce76eff673c24ed12591eb6c20e22ad7e4a790c48f72' + '6b77e333a3ef10e3f787fd2983afd69cdb48e82347fc3316510c2ba5639742a3') + +build() { + cd "${srcdir}/${pkgname}-${pkgver}" + patch -Np0 -i ../makefile_uname.patch + make +} + +package() { + cd "${srcdir}/${pkgname}-${pkgver}" + install -d ${pkgdir}/usr/bin + install -d ${pkgdir}/usr/share/doc/${pkgname} + install -Dm755 bowtie ${pkgdir}/usr/bin + install -Dm755 bowtie-build* ${pkgdir}/usr/bin + install -Dm755 bowtie-inspect* ${pkgdir}/usr/bin + install -Dm755 bowtie-align* ${pkgdir}/usr/bin + install -Dm755 scripts/* ${pkgdir}/usr/bin + install -Dm644 doc/* ${pkgdir}/usr/share/doc/${pkgname} + install -Dm644 TUTORIAL "${pkgdir}/usr/share/doc/${pkgname}/TUTORIAL" + install -Dm644 MANUAL "$pkgdir/usr/share/doc/$pkgname/MANUAL" + install -Dm644 MANUAL.markdown "$pkgdir/usr/share/doc/$pkgname/MANUAL.markdown" + install -Dm644 LICENSE "$pkgdir/usr/share/licenses/$pkgname/LICENSE" +} + +# vim:set ts=2 sw=2 et: diff --git a/makefile_uname.patch b/makefile_uname.patch new file mode 100644 index 000000000000..b9833cd6d4db --- /dev/null +++ b/makefile_uname.patch @@ -0,0 +1,11 @@ +--- Makefile 2013-04-18 21:33:44.000000000 +0200 ++++ Makefile 2013-06-26 16:25:17.622402991 +0200 +@@ -107,7 +107,7 @@ + endif + + ifeq (1,$(LINUX)) +- ifeq (x86_64, $(shell uname -p)) ++ ifeq (x86_64, $(shell uname -m)) + BITS=64 + endif + endif |