diff options
| -rw-r--r-- | .SRCINFO | 21 | ||||
| -rw-r--r-- | .gitignore | 10 | ||||
| -rw-r--r-- | PKGBUILD | 54 |
3 files changed, 36 insertions, 49 deletions
@@ -1,17 +1,16 @@ -# Generated by mksrcinfo v8 -# Mon Jul 4 22:11:30 UTC 2016 pkgbase = bowtie2-git - pkgdesc = Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence. - pkgver = v2.2.9.r9.g9c90266 + pkgdesc = Tool for aligning sequencing reads to long reference sequences + pkgver = 2.5.3.r0.ga43fa6f pkgrel = 1 - url = http://bowtie-bio.sourceforge.net/bowtie2 - arch = any - license = GPL3 - optdepends = intel-tbb: faster multithreading + url = https://bowtie-bio.sourceforge.net/bowtie2 + arch = x86_64 + license = GPL-3.0-only + makedepends = git + depends = perl + depends = python provides = bowtie2 conflicts = bowtie2 - source = git://github.com/BenLangmead/bowtie2 - md5sums = SKIP + source = bowtie2-git::git+https://github.com/BenLangmead/bowtie2 + sha256sums = SKIP pkgname = bowtie2-git - diff --git a/.gitignore b/.gitignore index 783d76e7bd7a..018a3de08144 100644 --- a/.gitignore +++ b/.gitignore @@ -1,6 +1,4 @@ -src/ -pkg/ -bowtie2/ -*.tar.gz -*.tar.xz -*.tar +* +!PKGBUILD +!.SRCINFO +!.gitignore @@ -1,46 +1,36 @@ -# $Id$ -# Maintainer: Grey Christoforo <first name [at] last name [dot] net> +# Maintainer: a821 < at mail dot de > +# Contributor: Grey Christoforo <first name [at] last name [dot] net> pkgname=bowtie2-git -_pkgname=bowtie2 -pkgver=v2.2.9.r9.g9c90266 +pkgver=2.5.3.r0.ga43fa6f pkgrel=1 -pkgdesc="Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence." -arch=("any") -optdepends=('intel-tbb: faster multithreading') -url="http://bowtie-bio.sourceforge.net/bowtie2" -license=('GPL3') -source=('git://github.com/BenLangmead/bowtie2') -md5sums=('SKIP') +pkgdesc="Tool for aligning sequencing reads to long reference sequences" +arch=("x86_64") +url="https://bowtie-bio.sourceforge.net/bowtie2" +license=('GPL-3.0-only') +depends=('perl' 'python') +makedepends=('git') +source=("$pkgname::git+https://github.com/BenLangmead/bowtie2") conflicts=('bowtie2') provides=('bowtie2') +sha256sums=('SKIP') pkgver() { - cd $_pkgname - git describe --long --tags | sed 's/\([^-]*-g\)/r\1/;s/-/./g' -} - -prepare() { - cd $_pkgname - make clean + cd $pkgname + git describe --long --tags | sed 's/^v//;s/-/.r/;s/-/./g' } build() { - cd $_pkgname - if pacman -Q intel-tbb > /dev/null 2>/dev/null; then - msg2 "Building with Intel's TBB multithreading support" - WITH_TBB=1 make - else - msg2 "You haven't installed the intel-tbb package; building without Intel's TBB multithreading support" - WITH_TBB=0 make - fi + cd $pkgname + make PREFIX=/usr } package() { - mkdir -p "${pkgdir}/opt/${_pkgname}" - cp -a "${srcdir}/${_pkgname}"/* "${pkgdir}/opt/${_pkgname}"/. - cd "${srcdir}/${_pkgname}" - make prefix=/usr DESTDIR="${pkgdir}" install - install -Dm644 "${srcdir}/${_pkgname}/MANUAL" -t "${pkgdir}/usr/share/doc/${_pkgname}" - install -Dm644 "${srcdir}/${_pkgname}/LICENSE" -t "$pkgdir/usr/share/licenses/${_pkgname}" + cd $pkgname + make PREFIX=/usr DESTDIR="$pkgdir" install + install -Dm644 -t "$pkgdir/usr/share/doc/$pkgname" \ + AUTHORS BOWTIE2_VERSION MANUAL* NEWS README.md TUTORIAL + cp -r doc example "$pkgdir/usr/share/doc/$pkgname" } + +# vim: set ts=4 sw=4 et: |