diff options
| -rw-r--r-- | .SRCINFO | 15 | ||||
| -rw-r--r-- | PKGBUILD | 27 |
2 files changed, 42 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..8518d1feb063 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,15 @@ +pkgbase = bwa + pkgdesc = Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome + pkgver = 0.7.12 + pkgrel = 1 + url = http://bio-bwa.sourceforge.net/ + arch = i686 + arch = x86_64 + license = GPL3 + depends = perl + depends = zlib + source = http://downloads.sourceforge.net/bio-bwa/0.7.12/bwa-0.7.12.tar.bz2 + md5sums = 075704634146ec8cc7543c0dee8960e7 + +pkgname = bwa + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..2d7e093dce27 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,27 @@ +# Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com> + +pkgname=bwa +pkgver=0.7.12 +pkgrel=1 +pkgdesc="Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome" +arch=('i686' 'x86_64') +url="http://bio-bwa.sourceforge.net/" +license=('GPL3') +depends=('perl' 'zlib') +source=(http://downloads.sourceforge.net/bio-bwa/$pkgver/$pkgname-$pkgver.tar.bz2) +md5sums=('075704634146ec8cc7543c0dee8960e7') + +build() { + cd $srcdir/$pkgname-$pkgver + + make +} + +package() { + cd $srcdir/$pkgname-$pkgver + + install -Dm755 bwa $pkgdir/usr/bin/bwa + install -Dm755 qualfa2fq.pl $pkgdir/usr/bin/qualfa2fq + install -Dm755 xa2multi.pl $pkgdir/usr/bin/xa2multi + install -Dm644 bwa.1 $pkgdir/usr/share/man/man1/bwa.1 +} |