diff options
| -rw-r--r-- | .SRCINFO | 4 | ||||
| -rw-r--r-- | PKGBUILD | 16 |
2 files changed, 15 insertions, 5 deletions
@@ -1,6 +1,6 @@ pkgbase = bwa-mem2-git pkgdesc = The next version of Burrows-Wheeler Aligner MEM algorithm - pkgver = r83.a06c1af + pkgver = r183.d43752d pkgrel = 1 url = https://github.com/bwa-mem2/bwa-mem2 arch = i686 @@ -9,6 +9,8 @@ pkgbase = bwa-mem2-git depends = gcc-libs depends = zlib source = git+https://github.com/bwa-mem2/bwa-mem2 + source = git+https://github.com/intel/safestringlib.git + md5sums = SKIP md5sums = SKIP pkgname = bwa-mem2-git @@ -2,15 +2,16 @@ pkgname=bwa-mem2-git _pkgname=bwa-mem2 -pkgver=r83.a06c1af +pkgver=r183.d43752d pkgrel=1 pkgdesc="The next version of Burrows-Wheeler Aligner MEM algorithm" arch=('i686' 'x86_64') url="https://github.com/bwa-mem2/bwa-mem2" license=('custom') depends=('gcc-libs' 'zlib') -source=("git+https://github.com/bwa-mem2/bwa-mem2") -md5sums=('SKIP') +source=("git+https://github.com/bwa-mem2/bwa-mem2" + "git+https://github.com/intel/safestringlib.git") +md5sums=('SKIP' 'SKIP') # For compiling for native instruction set only, set this to false: MULTI=${MULTI:-true} @@ -20,6 +21,13 @@ pkgver() { printf "r%s.%s" "$(git rev-list --count HEAD)" "$(git rev-parse --short HEAD)" } +prepare() { + cd "$srcdir/$_pkgname" + git submodule init + git config submodule.ext/safestringlib.url ${srcdir}/safestringlib + git submodule update +} + build() { cd "$srcdir/$_pkgname" if [ "$MULTI" = true ] ; then @@ -32,7 +40,7 @@ build() { package() { cd "$srcdir/$_pkgname" install -Dm755 bwa-mem2 "$pkgdir/usr/bin/bwa-mem2" - install -D -m644 LICENSE "$pkgdir/usr/share/licenses/$pkgname/LICENSE" + install -Dm644 LICENSE "$pkgdir/usr/share/licenses/$pkgname/LICENSE" if [ "$MULTI" = true ] ; then install -Dm755 bwa-mem2.avx2 "$pkgdir/usr/bin/bwa-mem2.avx2" |