diff options
| -rw-r--r-- | .SRCINFO | 5 | ||||
| -rw-r--r-- | PKGBUILD | 20 |
2 files changed, 15 insertions, 10 deletions
@@ -1,12 +1,11 @@ pkgbase = dendrix pkgdesc = Algorithm for discovery of mutated driver pathways in cancer using only mutation data pkgver = 0.3 - pkgrel = 1 + pkgrel = 2 url = http://compbio.cs.brown.edu/projects/dendrix/ arch = any - license = MIT + license = custom depends = python2 - provides = dendrix source = dendrix-0.3.zip::http://compbio-research.cs.brown.edu/software/Dendrix/Dendrix_v0.3.zip sha512sums = 39fd7983b34c25b5e69ed230d9f4da2795fb64057c9891afa136953855391cd8d019ac5cdfc28b69a931852b8dca381ebd01bf93c3cd7c53ab7b36f967479f7b @@ -2,13 +2,12 @@ pkgname=dendrix pkgver=0.3 -pkgrel=1 +pkgrel=2 pkgdesc="Algorithm for discovery of mutated driver pathways in cancer using only mutation data" arch=('any') url="http://compbio.cs.brown.edu/projects/dendrix/" -license=('MIT') +license=('custom') depends=('python2') -provides=('dendrix') source=("$pkgname-$pkgver.zip::http://compbio-research.cs.brown.edu/software/Dendrix/Dendrix_v$pkgver.zip") sha512sums=('39fd7983b34c25b5e69ed230d9f4da2795fb64057c9891afa136953855391cd8d019ac5cdfc28b69a931852b8dca381ebd01bf93c3cd7c53ab7b36f967479f7b') @@ -16,15 +15,22 @@ prepare() { cd Dendrix sed -e "s:#!/usr/bin/env python:#!/usr/bin/env python2:" \ + -e "s:README.txt:/usr/share/doc/$pkgname/README.txt:" \ -i Dendrix.py -i PermutationTestDendrix.py + sed -e "s/python Dendrix.py/dendrix/" -i Dendrix.py + sed -e "s/python permutationTestDendrix.py/permutation_test_dendrix/" -i PermutationTestDendrix.py } package() { cd Dendrix - install -Dm755 Dendrix.py "$pkgdir/usr/bin/Dendrix.py" - install -Dm755 PermutationTestDendrix.py "$pkgdir/usr/bin/PermutationTestDendrix.py" + install -Dm755 Dendrix.py "$pkgdir/usr/bin/dendrix" + install -Dm755 PermutationTestDendrix.py "$pkgdir/usr/bin/permutation_test_dendrix" install -Dm644 LICENSE.txt "$pkgdir/usr/share/licenses/$pkgname/LICENSE" - install -d "$pkgdir/usr/share/$pkgname/" - cp -r README.txt RELEASE_NOTES.txt example/ "$pkgdir/usr/share/$pkgname/" + + mkdir -p "$pkgdir/usr/share/$pkgname/" + mkdir -p "$pkgdir/usr/share/doc/$pkgname/" + + cp README.txt RELEASE_NOTES.txt "$pkgdir/usr/share/doc/$pkgname/" + cp -r example/ "$pkgdir/usr/share/$pkgname/" } |