diff options
| -rw-r--r-- | .SRCINFO | 7 | ||||
| -rw-r--r-- | PKGBUILD | 14 | ||||
| -rwxr-xr-x | eman2-installer | 16 |
3 files changed, 19 insertions, 18 deletions
@@ -1,15 +1,16 @@ pkgbase = eman2 pkgdesc = Greyscale scientific image processing suite for processing data from transmission electron microscopes - pkgver = 2.12 + pkgver = 2.2 pkgrel = 1 url = http://blake.bcm.edu/emanwiki/EMAN2 arch = x86_64 license = GPL + depends = python2 libjpeg-turbo python2-numpy hdf5 fftw boost libtiff libpng cmake gsl ftgl python2-matplotlib ipython qt4 python2-pyqt4 python2-opengl options = !strip - source = http://ncmi.bcm.edu/ncmi/software/counter_222/software_133/manage_addProduct/NCMI/attendee_factory/eman2.12.linux64.tar.gz + source = http://ncmi.bcm.edu/ncmi/software/counter_222/software_135/manage_addProduct/NCMI/attendee_factory/eman2.2.linux64.gcc5.tbz source = eman2.sh source = eman2-installer - md5sums = 2e21b310c957fc3b21f8c6b551b60fdb + md5sums = 961c4c16cbb17ddc92e387f4c7ba6556 md5sums = SKIP md5sums = SKIP @@ -5,16 +5,15 @@ # Maintainer: Joshua Hardy <joshinsilico@gmail.com> pkgname=eman2 -pkgver=2.12 +pkgver=2.2 pkgrel=1 pkgdesc="Greyscale scientific image processing suite for processing data from transmission electron microscopes" arch=(x86_64) url="http://blake.bcm.edu/emanwiki/EMAN2" license=('GPL') -depends=() -source=("http://ncmi.bcm.edu/ncmi/software/counter_222/software_133/manage_addProduct/NCMI/attendee_factory/eman$pkgver.linux64.tar.gz" -'eman2.sh' 'eman2-installer') -md5sums=('2e21b310c957fc3b21f8c6b551b60fdb' 'SKIP' 'SKIP') +depends=('python2 libjpeg-turbo python2-numpy hdf5 fftw boost libtiff libpng cmake gsl ftgl python2-matplotlib ipython qt4 python2-pyqt4 python2-opengl') +source=("http://ncmi.bcm.edu/ncmi/software/counter_222/software_135/manage_addProduct/NCMI/attendee_factory/eman$pkgver.linux64.gcc5.tbz" 'eman2.sh' 'eman2-installer') +md5sums=('961c4c16cbb17ddc92e387f4c7ba6556' 'SKIP' 'SKIP') options=(!strip) prepare () { @@ -24,11 +23,6 @@ prepare () { } build() { cd "$srcdir/EMAN2" -# sed -e 's,export EMAN2DIR=`pwd`,export EMAN2DIR=/opt/eman2,' $srcdir/EMAN2/eman2-installer > -#$srcdir/EMAN2/eman2-installer.tmp -# mv $srcdir/EMAN2/eman2-installer.tmp $srcdir/EMAN2/eman2-installer -# chmod +x eman2-installer -# EMAN2DIR=pwd ./eman2-installer } diff --git a/eman2-installer b/eman2-installer index 8254f7181222..b3982b335125 100755 --- a/eman2-installer +++ b/eman2-installer @@ -9,7 +9,7 @@ # Date: 9/1/2009, --disable_cache, Grant Tang # Date: 6/30/2013, Significant updates by Ian Rees for new build system. # Date: 8/01/2013, changed disable_cache to disable_gui - +# Date: 1/23/2017, altered eman2.[bashrc/cshrc] files to include new matplotlibrc file in extlib usage() { echo "usage: `basename $0` [--disable_gui]" @@ -34,8 +34,11 @@ setup_shell() { echo "Unkown shell. You will need set up your enviroment variables manually." fi if test "X${RCFILE}" != "X"; then - echo "Please add the following line to the end of your ${HOME}/${RCFILE} :" - echo "source ${EMAN2DIR}/eman2${RCFILE}" + #echo "Please add the following line to the end of your ${HOME}/${RCFILE} :" + #echo "source ${EMAN2DIR}/eman2${RCFILE}" + #echo "" + #echo "If you experience any problems after installation, please see for tips:" + #echo "http:/eman2.org/Install/BinaryInstall" fi } @@ -48,6 +51,7 @@ setup_csh() { echo 'else' >> ${OUT} echo ' setenv PYTHONPATH ${EMAN2DIR}/lib:${EMAN2DIR}/bin:${PYTHONPATH}' >> ${OUT} echo 'endif' >> ${OUT} + echo 'setenv MATPLOTLIBRC ${EMAN2DIR}/extlib' >> ${OUT} echo 'alias sparx sx.py' >> ${OUT} echo "setenv LC_CTYPE=en_US.utf8" echo "setenv LC_ALL=en_US.utf8" @@ -59,8 +63,10 @@ setup_bash() echo "export EMAN2DIR=${EMAN2DIR}" > ${OUT} echo 'export PATH=${EMAN2DIR}/bin:${EMAN2DIR}/extlib/bin:$PATH' >> ${OUT} echo 'export PYTHONPATH=${EMAN2DIR}/lib:${EMAN2DIR}/bin:${PYTHONPATH}' >> ${OUT} + echo 'export MATPLOTLIBRC=${EMAN2DIR}/extlib' >> ${OUT} echo 'export LC_CTYPE=en_US.utf8' echo 'export LC_ALL=en_US.utf8' + echo 'alias sphire=sxgui.py' >> ${OUT} echo 'alias sparx=sx.py' >> ${OUT} } @@ -69,9 +75,9 @@ setup_python() EMAN2PYTHON=$1 # Update python interpreter find ${EMAN2DIR}/extlib/bin -name "ipython" \ - -exec sed -i "s%^\#\!.*python.*$%\#\!/opt/eman2/extlib/bin/python%" {} \; + -exec sed -i "s%^\#\!.*python.*$%\#\!$/opt/eman2/extlib/bin/python%" {} \; find ${EMAN2DIR}/test ${EMAN2DIR}/bin ${EMAN2DIR}/lib ${EMAN2DIR}/examples -name "*.py" \ - -exec sed -i "s%^\#\!.*python.*$%\#\!/opt/eman2/extlib/bin/python%" {} \; + -exec sed -i "s%^\#\!.*python.*$%\#\!$/opt/eman2/extlib/bin/python%" {} \; find ${EMAN2DIR}/test ${EMAN2DIR}/bin ${EMAN2DIR}/lib ${EMAN2DIR}/examples -name "*.py" \ -exec chmod a+x {} \; # ... and for SPARX |