diff options
-rw-r--r-- | .SRCINFO | 2 | ||||
-rw-r--r-- | PKGBUILD | 24 |
2 files changed, 14 insertions, 12 deletions
@@ -1,7 +1,7 @@ pkgbase = kraken pkgdesc = Kraken taxonomic sequence classification system pkgver = 1.1 - pkgrel = 3 + pkgrel = 4 url = https://github.com/DerrickWood/kraken arch = x86_64 license = GPL3 @@ -3,7 +3,7 @@ _jellyfishver=1.1.11 pkgname=kraken pkgver=1.1 -pkgrel=3 +pkgrel=4 pkgdesc="Kraken taxonomic sequence classification system" arch=('x86_64') url=https://github.com/DerrickWood/"${pkgname}" @@ -30,11 +30,11 @@ prepare() { done sed -i "s# check_for_jellyfish.sh##g" scripts/build_kraken_db.sh - sed -i "s#jellyfish#${_installation_dir}/jellyfish#g" scripts/build_kraken_db.sh + sed -i "s# jellyfish # jellyfish-v1 #g" scripts/build_kraken_db.sh popd pushd "${srcdir}"/jellyfish-"${_jellyfishver}" - ./configure --prefix="${_installation_dir}" + ./configure --prefix=/usr make clean popd } @@ -63,12 +63,12 @@ package() { install -Dm775 "${script}" "${pkgdir}""${_installation_dir}"/ done - install -D -m644 LICENSE "${pkgdir}"/usr/share/licenses/"${pkgname}"_v"${pkgver}"/LICENSE - install -D -m644 README.md "${pkgdir}"/usr/share/doc/"${pkgname}"_v"${pkgver}"/README.md - install -D -m644 CHANGELOG "${pkgdir}"/usr/share/doc/"${pkgname}"_v"${pkgver}"/CHANGELOG + install -D -m644 LICENSE "${pkgdir}"/usr/share/licenses/"${pkgname}"/LICENSE + install -D -m644 README.md "${pkgdir}"/usr/share/doc/"${pkgname}"/README.md + install -D -m644 CHANGELOG "${pkgdir}"/usr/share/doc/"${pkgname}"/CHANGELOG for doc in docs/*; do - install -D -m644 "${doc}" "${pkgdir}"/usr/share/doc/"${pkgname}"_v"${pkgver}"/"${doc}" + install -D -m644 "${doc}" "${pkgdir}"/usr/share/doc/"${pkgname}"/"${doc}" done for file in "${pkgdir}${_installation_dir}"/kraken*; do @@ -76,9 +76,11 @@ package() { done cd "${srcdir}"/jellyfish-"${_jellyfishver}" - install -D -m644 LICENSE "${pkgdir}"/usr/share/licenses/jellyfish_"${_jellyfishver}"/LICENSE - install -D -m644 HalfLICENSE "${pkgdir}"/usr/share/licenses/jellyfish_"${_jellyfishver}"/HalfLICENSE - install -D -m644 README "${pkgdir}"/usr/share/doc/jellyfish-"${_jellyfishver}"/README + install -D -m644 LICENSE "${pkgdir}"/usr/share/licenses/jellyfish_v"${_jellyfishver}"/LICENSE + install -D -m644 HalfLICENSE "${pkgdir}"/usr/share/licenses/jellyfish_v"${_jellyfishver}"/HalfLICENSE + install -D -m644 README "${pkgdir}"/usr/share/doc/jellyfish-v"${_jellyfishver}"/README - install -Dm775 bin/jellyfish "${pkgdir}${_installation_dir}"/jellyfish + make DESTDIR="${pkgdir}" install + rm -r "${pkgdir}"/usr/share/man + mv "${pkgdir}"/usr/bin/jellyfish "${pkgdir}"/usr/bin/jellyfish-v1 } |