diff options
| -rw-r--r-- | .SRCINFO | 11 | ||||
| -rw-r--r-- | PKGBUILD | 40 |
2 files changed, 28 insertions, 23 deletions
@@ -1,18 +1,15 @@ pkgbase = kraken pkgdesc = Kraken taxonomic sequence classification system - pkgver = 1.0 + pkgver = 1.1 pkgrel = 1 url = https://github.com/DerrickWood/kraken arch = i686 arch = x86_64 license = GPL3 - depends = coreutils depends = perl - depends = jellyfish - provides = kraken - conflicts = kraken - source = https://github.com/DerrickWood/kraken/archive/v1.0.tar.gz - md5sums = e790d6b09662bbd810aa34517ef66586 + optdepends = jellyfish<=1: for building Kraken databases + source = kraken-1.1.tar.gz::https://github.com/DerrickWood/kraken/archive/v1.1.tar.gz + sha256sums = a4ac74c54c10920f431741c80d8a172670be12c3b352912000030fb5ea4c87a7 pkgname = kraken @@ -1,36 +1,44 @@ # Maintainer: Clint Valentine <valentine.clint@gmail.com> pkgname=kraken -pkgver=1.0 +pkgver=1.1 pkgrel=1 pkgdesc="Kraken taxonomic sequence classification system" arch=('i686' 'x86_64') url=https://github.com/DerrickWood/"${pkgname}" license=('GPL3') -depends=('coreutils' 'perl' 'jellyfish') -provides=('kraken') -conflicts=('kraken') -source=(https://github.com/DerrickWood/"${pkgname}"/archive/v"${pkgver}".tar.gz) -md5sums=('e790d6b09662bbd810aa34517ef66586') +depends=('perl') +optdepends=('jellyfish<=1: for building Kraken databases') +source=("${pkgname}"-"${pkgver}".tar.gz::https://github.com/DerrickWood/"${pkgname}"/archive/v"${pkgver}".tar.gz) +sha256sums=('a4ac74c54c10920f431741c80d8a172670be12c3b352912000030fb5ea4c87a7') +_installation_dir=/usr/share/"${pkgname}"-"${pkgver}" -package() { +prepare() { cd "${srcdir}"/"${pkgname}"-"${pkgver}" + sed -i "s#\$(KRAKEN_DIR)#${pkgdir}${_installation_dir}#g" src/Makefile + make -C src clean +} - installation_dir=/usr/share/"${pkgname}"-"${pkgver}" +build() { + cd "${srcdir}"/"${pkgname}"-"${pkgver}" + make -C src +} + +package() { + cd "${srcdir}"/"${pkgname}"-"${pkgver}" - mkdir -p "${pkgdir}""${installation_dir}" + mkdir -p "${pkgdir}""${_installation_dir}" mkdir -p "${pkgdir}"/usr/bin mkdir -p "${pkgdir}"/usr/share/licenses mkdir -p "${pkgdir}"/usr/share/doc - sed -i "s#\$(KRAKEN_DIR)#${pkgdir}${installation_dir}#g" src/Makefile make -C src install - for file in scripts/*; do - sed -i "s|#####=KRAKEN_DIR=#####|${installation_dir}|g" "${file}" - sed -i "s|#####=VERSION=#####|${pkgver}|g" "${file}" + for scripts in scripts/*; do + sed -i "s|#####=KRAKEN_DIR=#####|${_installation_dir}|g" "${scripts}" + sed -i "s|#####=VERSION=#####|${pkgver}|g" "${scripts}" - install -Dm775 "${file}" "${pkgdir}""${installation_dir}"/ + install -Dm775 "${scripts}" "${pkgdir}""${_installation_dir}"/ done install -D -m644 LICENSE "${pkgdir}"/usr/share/licenses/"${pkgname}"_v"${pkgver}"/LICENSE @@ -41,7 +49,7 @@ package() { install -D -m644 "${doc}" "${pkgdir}"/usr/share/doc/"${pkgname}"_v"${pkgver}"/"${doc}" done - for file in "${pkgdir}${installation_dir}"/kraken*; do - install -Dm775 "${file}" "${pkgdir}"/usr/bin/$(basename "${file}") + for file in "${pkgdir}${_installation_dir}"/kraken*; do + install -Dm775 "${file}" "${pkgdir}"/usr/bin/$( basename "${file}" ) done } |