diff options
| -rw-r--r-- | .SRCINFO | 14 | ||||
| -rw-r--r-- | PKGBUILD | 32 |
2 files changed, 46 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..a431bf622819 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,14 @@ +pkgbase = merlin-linkage + pkgdesc = Bioinformatics linkage analysis tool + pkgver = 1.1.2 + pkgrel = 1 + url = https://csg.sph.umich.edu/abecasis/Merlin + arch = i686 + arch = x86_64 + license = custom:merlin + depends = zlib + source = https://csg.sph.umich.edu/abecasis/Merlin/download/merlin-1.1.2.tar.gz + sha256sums = aa3c087b1c717209389705bf2ace4c24884575014a561dff250c0be93fe1e411 + +pkgname = merlin-linkage + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..5784c6940e67 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,32 @@ +# Maintainer: Alex Henrie <alexhenrie24@gmail.com> +pkgname=merlin-linkage +pkgver=1.1.2 +pkgrel=1 +pkgdesc="Bioinformatics linkage analysis tool" +arch=('i686' 'x86_64') +url="https://csg.sph.umich.edu/abecasis/Merlin" +license=('custom:merlin') +depends=('zlib') +source=("$url/download/merlin-$pkgver.tar.gz") +sha256sums=('aa3c087b1c717209389705bf2ace4c24884575014a561dff250c0be93fe1e411') + +prepare() { + cd "merlin-$pkgver" + #the pedstats component is not C++14 compliant + tar -C "$srcdir" -xf "pedstats-0.6.10.tar.gz" + sed -i 's/CFLAGS=/CFLAGS=-std=gnu++98 /' "$srcdir/pedstats-0.6.10/Makefile" + tar -C "$srcdir" -zcf "pedstats-0.6.10.tar.gz" "pedstats-0.6.10" +} + +build() { + cd "merlin-$pkgver" + make all + sed -n '/If you use MERLIN/,/information./p' README > LICENSE +} + +package() { + cd "merlin-$pkgver" + make INSTALLDIR="$pkgdir/usr/bin/" install + mkdir -p "$pkgdir/usr/share/licenses/merlin-linkage" + cp LICENSE LICENSE.twister "$pkgdir/usr/share/licenses/merlin-linkage" +} |