diff options
| -rw-r--r-- | .SRCINFO | 8 | ||||
| -rw-r--r-- | PKGBUILD | 8 | ||||
| -rw-r--r-- | ncbi-vdb-2.6.2.patch | 16 |
3 files changed, 26 insertions, 6 deletions
@@ -1,6 +1,6 @@ pkgbase = ncbi-vdb pkgdesc = The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives. - pkgver = 2.5.8 + pkgver = 2.6.2 pkgrel = 1 url = https://github.com/ncbi/ncbi-vdb arch = x86_64 @@ -9,8 +9,10 @@ pkgbase = ncbi-vdb depends = ngs depends = hdf5 provides = ncbi-vdb - source = https://github.com/ncbi/ncbi-vdb/archive/2.5.8.tar.gz - sha256sums = 7a0ccc3434220e5288a016e4a9e24d4a1deae2a7d5de594fc94b2442172b3229 + source = https://github.com/ncbi/ncbi-vdb/archive/2.6.2.tar.gz + source = ncbi-vdb-2.6.2.patch + sha256sums = c310edacd1a4f98a5cfab702f3eede98977ef64831f002fddd7728ed7e2034f4 + sha256sums = 4062cc8018e26192eaaff6d27205a3854e223f2e9c75b2d935a283bf85e1f99c pkgname = ncbi-vdb @@ -2,7 +2,7 @@ # Maintainer: Aaron Baker <aa{last name}99{at}gmail{dt}org> pkgname=ncbi-vdb -pkgver=2.5.8 +pkgver=2.6.2 pkgrel=1 pkgdesc="The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives." arch=('x86_64') @@ -10,11 +10,13 @@ url="https://github.com/ncbi/ncbi-vdb" depends=('libxml2' 'ngs' 'hdf5') provides=('ncbi-vdb') license=('custom:PublicDomain') -source=("https://github.com/ncbi/ncbi-vdb/archive/$pkgver.tar.gz") -sha256sums=('7a0ccc3434220e5288a016e4a9e24d4a1deae2a7d5de594fc94b2442172b3229') +source=("https://github.com/ncbi/ncbi-vdb/archive/$pkgver.tar.gz" "$pkgname-$pkgver.patch") +sha256sums=('c310edacd1a4f98a5cfab702f3eede98977ef64831f002fddd7728ed7e2034f4' '4062cc8018e26192eaaff6d27205a3854e223f2e9c75b2d935a283bf85e1f99c') prepare(){ cd "${pkgname}-${pkgver}" + # stop NCBI root checks for great good + patch -p1 -i "$srcdir/$pkgname-$pkgver.patch" } build(){ diff --git a/ncbi-vdb-2.6.2.patch b/ncbi-vdb-2.6.2.patch new file mode 100644 index 000000000000..7ed02c4d14e6 --- /dev/null +++ b/ncbi-vdb-2.6.2.patch @@ -0,0 +1,16 @@ +diff -aur ncbi-vdb-2.6.2/build/Makefile.install ncbi-vdb-2.6.2-patch/build/Makefile.install +--- ncbi-vdb-2.6.2/build/Makefile.install 2016-04-21 18:52:55.000000000 +0000 ++++ ncbi-vdb-2.6.2-patch/build/Makefile.install 2016-05-06 19:53:56.615385102 +0000 +@@ -66,12 +66,6 @@ + PROFILE_FILE = $(ROOT)/etc/profile.d/ncbi-vdb + KONFIG_DIR = $(ROOT)/etc/ncbi/ + +-ifeq (linux, $(OS)) +- ifeq (0, $(shell id -u)) +- LINUX_ROOT = true +- endif +-endif +- + install: copylibs copyincludes + ifeq (true, $(LINUX_ROOT)) + @ # install symlink to includes |