diff options
| -rw-r--r-- | .SRCINFO | 29 | ||||
| -rw-r--r-- | PKGBUILD | 41 |
2 files changed, 70 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..f353d46baa82 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,29 @@ +pkgbase = percolator-bin + pkgdesc = Software for postprocessing of shotgun proteomics data + format converters + Elude tool + pkgver = 2.08.01 + pkgrel = 1 + url = http://per-colator.com/ + arch = x86_64 + license = Apache + depends = gcc-libs + provides = percolator + conflicts = percolator-git + noextract = percolator-2-08-01-amd64.deb + noextract = percolator-converters-2-08-01-amd64.deb + noextract = elude-2-08-01-amd64.deb + source = percolator-2-08-01-amd64.deb::http://sourceforge.net/projects/percolator/files/v2-08-01/percolator-v2-08-01-linux-amd64.deb/download + source = percolator-converters-2-08-01-amd64.deb::http://sourceforge.net/projects/percolator/files/v2-08-01/percolator-converters-v2-08-01-linux-amd64.deb/download + source = elude-2-08-01-amd64.deb::http://sourceforge.net/projects/percolator/files/v2-08-01/elude-v2-08-01-linux-amd64.deb/download + md5sums = 734847fcc956adf81705400ce5dac48d + md5sums = 30a19985fbd2fb2962d836aa8c4e7a8c + md5sums = 116fa76bc81fddcfef63871516fdf4b1 + +pkgname = percolator + pkgdesc = Percolator and qvality, two post processors for shotgun proteomics data. + +pkgname = percolator-converters + pkgdesc = Parsers of different database search engines to percolator input format. + +pkgname = elude + pkgdesc = Software package for prediction of retention times in mass spectorometry experiments. + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..8adcf5adff8b --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,41 @@ +# Maintainer: Lev Levitsky <levlev@mail.ru> +pkgbase=('percolator-bin') +pkgname=('percolator' 'percolator-converters' 'elude') +pkgver=2.08.01 +pkgrel=1 +epoch= +pkgdesc="Software for postprocessing of shotgun proteomics data + format converters + Elude tool" +arch=('x86_64') +url="http://per-colator.com/" +license=('Apache') +depends=('gcc-libs') +provides=("${pkgname%-bin}") +conflicts=("${pkgname%-bin}-git") +noextract=("${pkgname[0]}-${pkgver//./-}-amd64.deb" + "${pkgname[1]}-${pkgver//./-}-amd64.deb" + "${pkgname[2]}-${pkgver//./-}-amd64.deb") +source=("${noextract[0]}::http://sourceforge.net/projects/${pkgbase%-bin}/files/v${pkgver//./-}/${pkgname[0]}-v${pkgver//./-}-linux-amd64.deb/download" +"${noextract[1]}::http://sourceforge.net/projects/${pkgbase%-bin}/files/v${pkgver//./-}/${pkgname[1]}-v${pkgver//./-}-linux-amd64.deb/download" +"${noextract[2]}::http://sourceforge.net/projects/${pkgbase%-bin}/files/v${pkgver//./-}/${pkgname[2]}-v${pkgver//./-}-linux-amd64.deb/download") + +md5sums=('734847fcc956adf81705400ce5dac48d' + '30a19985fbd2fb2962d836aa8c4e7a8c' + '116fa76bc81fddcfef63871516fdf4b1') + +package_percolator() { + pkgdesc="Percolator and qvality, two post processors for shotgun proteomics data." + ar x "${srcdir}/${noextract[0]}" + tar -xzf "${srcdir}/data.tar.gz" -C "$pkgdir" +} + +package_percolator-converters() { + pkgdesc="Parsers of different database search engines to percolator input format." + ar x "${srcdir}/${noextract[1]}" + tar -xzf "${srcdir}/data.tar.gz" -C "$pkgdir" +} + +package_elude() { + pkgdesc="Software package for prediction of retention times in mass spectorometry experiments." + ar x "${srcdir}/${noextract[2]}" + tar -xzf "${srcdir}/data.tar.gz" -C "$pkgdir" +}
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