diff options
| -rw-r--r-- | .SRCINFO | 8 | ||||
| -rw-r--r-- | PKGBUILD | 10 |
2 files changed, 6 insertions, 12 deletions
@@ -1,8 +1,8 @@ # Generated by mksrcinfo v8 -# Sat Mar 5 09:56:24 UTC 2016 +# Sun May 29 18:31:37 UTC 2016 pkgbase = picard-tools pkgdesc = set of tools for working with next generation sequencing data in the BAM format - pkgver = 2.1.1 + pkgver = 2.4.1 pkgrel = 1 url = https://github.com/broadinstitute/picard arch = i686 @@ -10,10 +10,10 @@ pkgbase = picard-tools license = GPL2 depends = bash depends = java-runtime>=6 - source = https://github.com/broadinstitute/picard/releases/download/2.1.1/picard-tools-2.1.1.zip + source = https://github.com/broadinstitute/picard/releases/download/2.4.1/picard-tools-2.4.1.zip source = picard-profile.sh source = picard.sh - md5sums = 4593fc3a392158731612a7d595f0e505 + md5sums = c59cfd7bd38ccdb334c70f675ae18c76 md5sums = ebcda2d2c55df6d05994252cf22a68c2 md5sums = 0987aa56f62f5e843bfa788cc93626c8 @@ -1,7 +1,7 @@ # Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com> pkgname=picard-tools -pkgver=2.1.1 +pkgver=2.4.1 pkgrel=1 pkgdesc='set of tools for working with next generation sequencing data in the BAM format' arch=('i686' 'x86_64') @@ -11,7 +11,7 @@ depends=('bash' 'java-runtime>=6') source=("https://github.com/broadinstitute/picard/releases/download/$pkgver/$pkgname-$pkgver.zip" 'picard-profile.sh' 'picard.sh') -md5sums=('4593fc3a392158731612a7d595f0e505' +md5sums=('c59cfd7bd38ccdb334c70f675ae18c76' 'ebcda2d2c55df6d05994252cf22a68c2' '0987aa56f62f5e843bfa788cc93626c8') @@ -22,12 +22,6 @@ package() { install -Dm755 $f $pkgdir/usr/share/java/picard-tools/$f done - install -Dm755 libIntelDeflater.so $pkgdir/usr/lib/libIntelDeflater.so - - pushd $pkgdir/usr/share/java/picard-tools > /dev/null - ln -s ../../../lib/libIntelDeflater.so - popd > /dev/null - install -Dm755 $srcdir/picard.sh $pkgdir/usr/bin/picard install -Dm755 $srcdir/picard-profile.sh $pkgdir/etc/profile.d/picard.sh } |