diff options
-rw-r--r-- | .SRCINFO | 17 | ||||
-rw-r--r-- | PKGBUILD | 38 |
2 files changed, 55 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..2cb6a6669c5e --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,17 @@ +pkgbase = proovread + pkgdesc = large-scale high accuracy PacBio correction through iterative short read consensus + pkgver = 2.12 + pkgrel = 1 + url = https://github.com/BioInf-Wuerzburg/proovread + arch = any + license = PerlArtistic + depends = blasr-git + depends = perl-log-log4perl + depends = blast+>=2.2.24 + depends = samtools>=1.1 + depends = shrimp + source = proovread::git+https://github.com/BioInf-Wuerzburg/proovread#tag=proovread-2.12 + md5sums = SKIP + +pkgname = proovread + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..93f5f1047980 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,38 @@ +# Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com> + +pkgname=proovread +pkgver=2.12 +pkgrel=1 +pkgdesc="large-scale high accuracy PacBio correction through iterative short read consensus" +arch=('any') +url="https://github.com/BioInf-Wuerzburg/proovread" +license=('PerlArtistic') +depends=('blasr-git' 'perl-log-log4perl' 'blast+>=2.2.24' 'samtools>=1.1' 'shrimp') +source=("$pkgname::git+https://github.com/BioInf-Wuerzburg/proovread#tag=proovread-2.12") +md5sums=('SKIP') + +prepare() { + cd $srcdir/$pkgname + + git submodule init + git submodule update +} + +build() { + cd $srcdir/$pkgname/util/bwa + + make +} + +package() { + cd $srcdir/$pkgname + + mkdir -p $pkgdir/usr/bin \ + $pkgdir/usr/lib/perl5/vendor_perl + + for file in bin/* util/SeqChunker/bin/* ; do + install -Dm755 $file $pkgdir/usr/bin/$(basename $file .pl) + done + + cp -r lib/* $pkgdir/usr/lib/perl5/vendor_perl +} |