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| -rw-r--r-- | .SRCINFO | 26 | ||||
| -rw-r--r-- | PKGBUILD | 36 |
2 files changed, 62 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..f2553cb4518d --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,26 @@ +pkgbase = python-pybedtools + pkgdesc = Python wrapper for Aaron Quinlan's bedtools. + pkgver = 0.7.10.r21.g7143a86 + pkgrel = 1 + url = http://daler.github.io/pybedtools + arch = any + license = GPL2 + makedepends = cython + makedepends = python-setuptools + depends = python + depends = python-numpy + depends = python-pandas + depends = python-pysam>=0.8.1 + depends = python-six + optdepends = bedtools: more-or-less required by namesake + optdepends = htslib: for working with SAM/BAM/CRAM files + optdepends = python-matplotlib: for plotting genomic intervals + optdepends = ucsc-kent-genome-tools: for bedgraph to bigwig conversions + provides = python-pybedtools + conflicts = python-pybedtools + options = !emptydirs + source = git+https://github.com/daler/pybedtools.git + md5sums = SKIP + +pkgname = python-pybedtools + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..49a2f4158594 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,36 @@ +# Maintainer: Clint Valentine <valentine.clint@gmail.com> + +pkgname='python-pybedtools' +pkgver=0.7.10.r21.g7143a86 +pkgrel=1 +pkgdesc="Python wrapper for Aaron Quinlan's bedtools." +arch=('any') +url="http://daler.github.io/pybedtools" +license=('GPL2') +depends=( + 'python' + 'python-numpy' + 'python-pandas' + 'python-pysam>=0.8.1' + 'python-six') +makedepends=('cython' 'python-setuptools') +optdepends=( + 'bedtools: more-or-less required by namesake' + 'htslib: for working with SAM/BAM/CRAM files' + 'python-matplotlib: for plotting genomic intervals' + 'ucsc-kent-genome-tools: for bedgraph to bigwig conversions') +provides=('python-pybedtools') +conflicts=('python-pybedtools') +options=(!emptydirs) +source=("git+https://github.com/daler/pybedtools.git") +md5sums=('SKIP') + +pkgver() { + cd "pybedtools" + git describe --long | sed 's/\([^-]*-g\)/r\1/;s/-/./g' | sed s'/v//' +} + +package() { + cd "${srcdir}/pybedtools" + python setup.py install --root="${pkgdir}/" --optimize=1 +} |