diff options
| -rw-r--r-- | .SRCINFO | 22 | ||||
| -rw-r--r-- | .gitignore | 1 | ||||
| -rw-r--r-- | CHANGELOG.md | 114 | ||||
| -rw-r--r-- | PKGBUILD | 53 |
4 files changed, 157 insertions, 33 deletions
@@ -1,21 +1,19 @@ pkgbase = python-ripser - pkgdesc = nested sampling visualisation - pkgver = 0.4.1 + pkgdesc = A Lean Persistent Homology Library for Python + pkgver = 0.6.8 pkgrel = 1 url = https://github.com/scikit-tda/ripser.py - arch = any + changelog = CHANGELOG.md + arch = x86_64 license = MIT + checkdepends = python-pytest + makedepends = python-build + makedepends = python-installer makedepends = python-setuptools + makedepends = python-wheel makedepends = cython - depends = python - depends = cython - depends = python-numpy - depends = python-scipy - depends = python-scikit-learn depends = python-persim - options = !emptydirs - source = https://github.com/scikit-tda/ripser.py/archive/v0.4.1.tar.gz - sha256sums = ec7f34935f5e6d3430c7f5a27007ccf4f50a21936d4045c0d3aa1e77209ef8fa + source = ripser.py-0.6.8.tar.gz::https://github.com/scikit-tda/ripser.py/archive/v0.6.8.tar.gz + sha512sums = 86e5f5aeee23428374197ebee7d582e0e61c01acdc8860f1ac089993efb62d400dbfca21a920f9911c603e7604d8ee4f803bd89b1a3cbc5750d4a876fab6aca0 pkgname = python-ripser - diff --git a/.gitignore b/.gitignore new file mode 100644 index 000000000000..f59ec20aabf5 --- /dev/null +++ b/.gitignore @@ -0,0 +1 @@ +*
\ No newline at end of file diff --git a/CHANGELOG.md b/CHANGELOG.md new file mode 100644 index 000000000000..4fb420d03e89 --- /dev/null +++ b/CHANGELOG.md @@ -0,0 +1,114 @@ +# 0.6.8 + + - Update CD commands for newer build system. + +# 0.6.7 + + - Failed to build wheels. This version does not exist. + +# 0.6.6 + + - Failed to build wheels. This version does not exist. + +# 0.6.5 + + - Bugfix for lower star filtrations with edges that come in at exactly 0 (courtesy of Riccardo Ceccaroni) + +# 0.6.4 + + - Add some includes to ripser.cpp for newer Ubuntu/C++ environments + +# 0.6.3 + + - Update numpy header + +# 0.6.2 + + - Prevent simplex assembly in last dimension for improved memory usage (courtesy of Umberto Lupo) + +# 0.6.1 + + - Lazy import plotting dependencies + +# 0.6.0 + + - Update C++ backend to commit 286d369 of [ripser](https://github.com/Ripser/ripser) but keeping same functionalities + - Add support to robinhood hashmap into the C++ Backend + - Update CI in order to compile C++ with robinhood enable + - Enable Enclosing radius when threshold is set to infinity + +# 0.5.5 + + - Updating CI/CD pipeline. + +# 0.5.4 + + - Fixing issue with inconsistent answers from different scipy.sparse formats, courtesy of Umberto Lupo + +# 0.5.3 + + - Adding link to ripser++ GPU version by Simon Zhang + +# 0.5.2: + + - Cocycle indices now correspond to point cloud indices, even + when a greedy permutation is in use + +# 0.4.1: + + - Fixed packing so C++ is MSVC compatible. + +# 0.4.0: + + - Added license to distributed packages. + +# 0.3.2: + + - Added support for greedy permutations. + - Outsourced plotting to persim. + - Outsourced data construction in examples to tadasets. + - Revamped documentation. + +# 0.3.0: + + - Completed JOSS review, thanks @lmcinnes and @arokem!! + - Documentation details updated. + +# 0.2.7: + + - Updating home url + +# 0.2.6: + + - Update license to MIT. + +# 0.2.5: + + - Docs and notebooks revamp. + - Support for Windows. + +# 0.2.4: + + - Interface redesign + +# 0.2.3: + + - Support for lower star filtrations + - Notebook on lower star filtrations + +# 0.2.1: + + - Sparse distance matrix support + - Two additional notebooks about sparsity + - Language agnostic bindings support + - Bug fixes (filtrations with low number of points) + +# 0.2.0: + + - Bug fixes (int rounding error for small magnitude threshold) + +# 0.1.7: + + - Generation of cocycles. + - Handle inf in C code and in plotting. + - Many new options for plotting diagrams. @@ -1,24 +1,35 @@ -# Maintainer: Will Handley <wh260@cam.ac.uk> (aur.archlinux.org/account/wjhandley) -_modulename=ripser -pkgname=python-$_modulename -pkgver=0.4.1 +# Maintainer: Carlos Aznarán <caznaranl@uni.pe> +# Contributor: Luis Martinez <luis dot martinez at disroot dot org> +# Contributor: Will Handley <wh260@cam.ac.uk> (aur.archlinux.org/account/wjhandley) +_base=ripser +pkgname=python-${_base} +pkgver=0.6.8 pkgrel=1 -pkgdesc="nested sampling visualisation" -arch=(any) -url="https://github.com/scikit-tda/ripser.py" -license=('MIT') -groups=() -depends=('python' 'cython' 'python-numpy' 'python-scipy' 'python-scikit-learn' 'python-persim') -makedepends=('python-setuptools' 'cython') -provides=() -conflicts=() -replaces=() -backup=() -options=(!emptydirs) -install= -source=("${url}/archive/v${pkgver}.tar.gz") -sha256sums=('ec7f34935f5e6d3430c7f5a27007ccf4f50a21936d4045c0d3aa1e77209ef8fa') +pkgdesc="A Lean Persistent Homology Library for Python" +arch=(x86_64) +url="https://github.com/scikit-tda/${_base}.py" +license=(MIT) +depends=(python-persim) +makedepends=(python-build python-installer python-setuptools python-wheel cython) +checkdepends=(python-pytest) +changelog=CHANGELOG.md +source=(${_base}.py-${pkgver}.tar.gz::${url}/archive/v${pkgver}.tar.gz) +sha512sums=('86e5f5aeee23428374197ebee7d582e0e61c01acdc8860f1ac089993efb62d400dbfca21a920f9911c603e7604d8ee4f803bd89b1a3cbc5750d4a876fab6aca0') + +build() { + cd ${_base}.py-${pkgver} + python -m build --wheel --skip-dependency-check --no-isolation +} + +check() { + cd ${_base}.py-${pkgver} + python -m venv --system-site-packages test-env + test-env/bin/python -m installer dist/*.whl + test-env/bin/python -m pytest +} + package() { - cd "$srcdir/${_modulename}.py-$pkgver" - python setup.py install --root="$pkgdir/" --optimize=1 + cd ${_base}.py-${pkgver} + PYTHONPYCACHEPREFIX="${PWD}/.cache/cpython/" python -m installer --destdir="${pkgdir}" dist/*.whl + install -Dm 644 LICENSE.txt -t "${pkgdir}/usr/share/licenses/${pkgname}" } |