diff options
| -rw-r--r-- | .SRCINFO | 51 | ||||
| -rw-r--r-- | .gitignore | 8 | ||||
| -rw-r--r-- | PKGBUILD | 99 | ||||
| -rw-r--r-- | fix_doc_version.patch | 13 |
4 files changed, 98 insertions, 73 deletions
@@ -1,40 +1,35 @@ -# Generated by mksrcinfo v8 -# Wed Dec 5 19:30:11 UTC 2018 pkgbase = python-spectral-cube pkgdesc = Library for reading and analyzing astrophysical spectral data cubes - pkgver = 0.4.3 + pkgver = 0.6.5 pkgrel = 1 - url = http://spectral-cube.readthedocs.io/en/latest/ - arch = i686 - arch = x86_64 + url = http://spectral-cube.readthedocs.io + arch = any license = BSD - makedepends = cython - makedepends = cython2 - makedepends = python-astropy-helpers>=3.1 - makedepends = python2-astropy-helpers - makedepends = python-radio_beam - makedepends = python-sphinx + makedepends = python-setuptools-scm + makedepends = python-wheel + makedepends = python-build + makedepends = python-installer makedepends = python-sphinx-astropy - source = https://files.pythonhosted.org/packages/source/s/spectral-cube/spectral-cube-0.4.3.tar.gz - md5sums = 717815d68f42a9d76ba61d27931712e1 + makedepends = python-dask + makedepends = python-radio_beam + makedepends = python-casa-formats-io + source = https://files.pythonhosted.org/packages/source/s/spectral-cube/spectral-cube-0.6.5.tar.gz + md5sums = 9088a0db1f7fddf3a79d799abc14bae2 pkgname = python-spectral-cube - depends = python depends = python-numpy>=1.8 - depends = python-astropy>=1.0 - depends = python-radio_beam + depends = python-astropy>=4.0 + depends = python-radio_beam>=0.3.3 + depends = python-joblib + depends = python-dask + depends = python-six + depends = python-casa-formats-io + optdepends = python-scipy: Used for subcube creation optdepends = python-bottleneck: Speeds up median and percentile operations on cubes with missing data - optdepends = python-spectral-cube-doc: Documentation for Radio Beam - -pkgname = python2-spectral-cube - depends = python2>=2.7 - depends = python2-numpy>=1.8 - depends = python2-astropy>=1.0 - depends = python2-radio_beam - optdepends = python2-bottleneck: Speeds up median and percentile operations on cubes with missing data - optdepends = python-spectral-cube-doc: Documentation for Radio Beam - optdepends = python-pytest-astropy: For testing + optdepends = python-regions>=0.7: Serialises/Deserialises DS9/CRTF region files and handles them. Used when extracting a subcube from region + optdepends = python-spectral-cube-doc: Documentation for spectral-cube + optdepends = python-fsspec: Used for storing computations to disk when using the dask-enabled classes + optdepends = python-zarr: Used for storing computations to disk when using the dask-enabled classes pkgname = python-spectral-cube-doc pkgdesc = Documentation for Python Radio Beam module - diff --git a/.gitignore b/.gitignore new file mode 100644 index 000000000000..e896dcd6056d --- /dev/null +++ b/.gitignore @@ -0,0 +1,8 @@ +src +pkg +*.src.tar.gz +*.tar.gz +*.tar.bz2 +*.part +*.pkg.tar.* +*.log @@ -1,72 +1,81 @@ # Maintainer: Astro Benzene <universebenzene at sina dot com> + pkgbase=python-spectral-cube -pkgname=('python-spectral-cube' 'python2-spectral-cube' 'python-spectral-cube-doc') -pkgver=0.4.3 +_pyname=${pkgbase#python-} +pkgname=("python-${_pyname}" "python-${_pyname}-doc") +pkgver=0.6.5 pkgrel=1 pkgdesc="Library for reading and analyzing astrophysical spectral data cubes" -arch=('i686' 'x86_64') -url="http://spectral-cube.readthedocs.io/en/latest/" +arch=('any') +url="http://spectral-cube.readthedocs.io" license=('BSD') -makedepends=('cython' 'cython2' 'python-astropy-helpers>=3.1' 'python2-astropy-helpers' 'python-radio_beam' 'python-sphinx' 'python-sphinx-astropy') -#checkdepends=('python-pytest-astropy' 'python2-pytest' 'python-radio_beam' 'python2-radio_beam') -source=("https://files.pythonhosted.org/packages/source/s/spectral-cube/spectral-cube-${pkgver}.tar.gz") -md5sums=('717815d68f42a9d76ba61d27931712e1') - -prepare() { - cd ${srcdir}/spectral-cube-${pkgver} - sed -i -e '/auto_use/s/True/False/' setup.cfg +makedepends=('python-setuptools-scm' + 'python-wheel' + 'python-build' + 'python-installer' + 'python-sphinx-astropy' + 'python-dask' + 'python-radio_beam' + 'python-casa-formats-io') # astropy <- radio_beam +#checkdepends=('python-pytest-astropy-header' +# 'python-joblib' +# 'python-reproject' +# 'python-six' +# 'python-bottleneck' +# 'python-zarr' +# 'python-aplpy' +# 'python-pvextractor' +# 'python-regions' +# 'python-yt' +# 'python-glue-qt' +# 'qt5-svg') +# dask radio_beam 'python-casa-formats-io' already in makedepends; matplotlib <- aplpy, glue(also scipy), pvextractor... +source=("https://files.pythonhosted.org/packages/source/${_pyname:0:1}/${_pyname}/${_pyname}-${pkgver}.tar.gz") +md5sums=('9088a0db1f7fddf3a79d799abc14bae2') - cp -a ${srcdir}/spectral-cube-${pkgver}{,-py2} +get_pyver() { + python -c "import sys; print('$1'.join(map(str, sys.version_info[:2])))" } build() { - msg "Building Python2" - cd ${srcdir}/spectral-cube-${pkgver}-py2 - python2 setup.py build --use-system-libraries --offline - - msg "Building Python3" - cd ${srcdir}/spectral-cube-${pkgver} - python setup.py build --use-system-libraries --offline + cd ${srcdir}/${_pyname}-${pkgver} + python -m build --wheel --no-isolation msg "Building Docs" - python setup.py build_docs + ln -rs ${srcdir}/${_pyname}-${pkgver}/${_pyname/-/_}*egg-info \ + build/lib/${_pyname/-/_}-${pkgver}-py$(get_pyver .).egg-info + PYTHONPATH="../build/lib" make -C docs html } -#check() { -# cd ${srcdir}/spectral-cube-${pkgver} -# python setup.py test +#check() { # Circular deps +# cd ${srcdir}/${_pyname}-${pkgver} # -# cd ${srcdir}/spectral-cube-${pkgver}-py2 -# python2 setup.py test +# pytest -vv -l -ra --color=yes -o console_output_style=count \ +## --deselect=spectral_cube/tests/test_io.py::test_3d_beams_roundtrip[True] \ +## --deselect=spectral_cube/tests/test_io.py::test_4d_beams_roundtrip[True] \ +## --deselect=spectral_cube/tests/test_spectral_cube.py::test_read_write_rountrip[True] || warning "Tests failed" # -vv -l -ra --color=yes -o console_output_style=count #} -package_python2-spectral-cube() { - depends=('python2>=2.7' 'python2-numpy>=1.8' 'python2-astropy>=1.0' 'python2-radio_beam') - optdepends=('python2-bottleneck: Speeds up median and percentile operations on cubes with missing data' - 'python-spectral-cube-doc: Documentation for Radio Beam' - 'python-pytest-astropy: For testing') - cd ${srcdir}/spectral-cube-${pkgver}-py2 - - install -D -m644 LICENSE.rst -t "${pkgdir}/usr/share/licenses/${pkgname}" - install -D -m644 README.md -t "${pkgdir}/usr/share/doc/${pkgname}" - python2 setup.py install --root=${pkgdir} --prefix=/usr --optimize=1 --use-system-libraries --offline -} - package_python-spectral-cube() { - depends=('python' 'python-numpy>=1.8' 'python-astropy>=1.0' 'python-radio_beam') - optdepends=('python-bottleneck: Speeds up median and percentile operations on cubes with missing data' - 'python-spectral-cube-doc: Documentation for Radio Beam') - cd ${srcdir}/spectral-cube-${pkgver} + depends=('python-numpy>=1.8' 'python-astropy>=4.0' 'python-radio_beam>=0.3.3' 'python-joblib' 'python-dask' 'python-six' 'python-casa-formats-io') + optdepends=('python-scipy: Used for subcube creation' + 'python-bottleneck: Speeds up median and percentile operations on cubes with missing data' + 'python-regions>=0.7: Serialises/Deserialises DS9/CRTF region files and handles them. Used when extracting a subcube from region' + 'python-spectral-cube-doc: Documentation for spectral-cube' + 'python-fsspec: Used for storing computations to disk when using the dask-enabled classes' + 'python-zarr: Used for storing computations to disk when using the dask-enabled classes') + cd ${srcdir}/${_pyname}-${pkgver} install -D -m644 LICENSE.rst -t "${pkgdir}/usr/share/licenses/${pkgname}" - install -D -m644 README.md -t "${pkgdir}/usr/share/doc/${pkgname}" - python setup.py install --root=${pkgdir} --prefix=/usr --optimize=1 --use-system-libraries --offline + install -D -m644 README.rst -t "${pkgdir}/usr/share/doc/${pkgname}" + python -m installer --destdir="${pkgdir}" dist/*.whl } package_python-spectral-cube-doc() { pkgdesc="Documentation for Python Radio Beam module" - cd ${srcdir}/spectral-cube-${pkgver}/docs/_build + cd ${srcdir}/${_pyname}-${pkgver}/docs/_build + install -D -m644 -t "${pkgdir}/usr/share/licenses/${pkgname}" ../../LICENSE.rst install -d -m755 "${pkgdir}/usr/share/doc/${pkgbase}" cp -a html "${pkgdir}/usr/share/doc/${pkgbase}" } diff --git a/fix_doc_version.patch b/fix_doc_version.patch new file mode 100644 index 000000000000..38e34b8b94ae --- /dev/null +++ b/fix_doc_version.patch @@ -0,0 +1,13 @@ +--- a/docs/conf.py 2020-09-18 04:29:50.000000000 +0800 ++++ b/docs/conf.py 2020-09-18 19:54:11.025457472 +0800 +@@ -76,8 +76,8 @@ + # |version| and |release|, also used in various other places throughout the + # built documents. + +-from pkg_resources import get_distribution +-version = release = get_distribution(setup_cfg['name']).version ++from spectral_cube import __version__ ++version = release = __version__ + + # -- Options for HTML output -------------------------------------------------- + |