diff options
| -rw-r--r-- | .SRCINFO | 11 | ||||
| -rw-r--r-- | PKGBUILD | 30 | ||||
| -rw-r--r-- | setup.patch | 49 |
3 files changed, 71 insertions, 19 deletions
@@ -1,16 +1,23 @@ +# Generated by mksrcinfo v8 +# Tue Dec 20 16:36:22 UTC 2016 pkgbase = python2-sloppycell pkgdesc = Software environment for simulation and analysis of biomolecular networks - pkgver = 20110614 + pkgver = r860.14366d3 pkgrel = 1 + epoch = 1 url = http://sloppycell.sourceforge.net/ arch = i686 arch = x86_64 license = BSD - makedepends = cvs + makedepends = git makedepends = gcc-fortran depends = python2-scipy depends = python2-numpy depends = lapack + source = git+http://git.code.sf.net/p/sloppycell/git + source = setup.patch + md5sums = SKIP + md5sums = 3b7af95a88305880a8fc1340c7a0790f pkgname = python2-sloppycell @@ -1,34 +1,30 @@ # Maintainer: Michael Schubert <mschu.dev at gmail> - pkgname=python2-sloppycell -pkgver=20110614 +pkgver=r860.14366d3 pkgrel=1 +epoch=1 pkgdesc="Software environment for simulation and analysis of biomolecular networks" arch=('i686' 'x86_64') url="http://sloppycell.sourceforge.net/" license=('BSD') depends=('python2-scipy' 'python2-numpy' 'lapack') -makedepends=('cvs' 'gcc-fortran') +makedepends=('git' 'gcc-fortran') +source=("git+http://git.code.sf.net/p/sloppycell/git" + "setup.patch") +md5sums=('SKIP' + '3b7af95a88305880a8fc1340c7a0790f') -_cvsroot=":pserver:anonymous@sloppycell.cvs.sourceforge.net:/cvsroot" -_cvsmod="sloppycell" -_cvsMod="SloppyCell" +pkgver() { + cd "$srcdir"/git + printf "r%s.%s" "$(git rev-list --count HEAD)" "$(git rev-parse --short HEAD)" +} build() { - cd "$srcdir" - if [ -d ${_cvsMod}/CVS ]; then - cd ${_cvsMod} - cvs -q update -dA - else - cvs -q -z3 -d${_cvsroot}/${_cvsmod} co ${_cvsMod} - cd ${_cvsMod} - sed -i "/daskr =/s|$| extra_link_args='-Wl,--defsym,main=main',|" setup.py - fi + cd "$srcdir"/git python2 setup.py build } package() { - cd "$srcdir/$_cvsMod" + cd "$srcdir"/git python2 setup.py install --root="$pkgdir/" --skip-build --optimize=1 } - diff --git a/setup.patch b/setup.patch new file mode 100644 index 000000000000..1c91ef7e7fde --- /dev/null +++ b/setup.patch @@ -0,0 +1,49 @@ +--- setup.py.orig 2016-12-20 17:34:58.140428476 +0100 ++++ setup.py 2016-12-20 17:35:23.547463313 +0100 +@@ -1,8 +1,8 @@ +-# This gets f2py_signatures installed in the correct place. See ++# This gets f2py_signatures installed in the correct place. See + # http://groups.google.com/group/comp.lang.python/browse_thread/thread/35ec7b2fed36eaec/2105ee4d9e8042cb + from distutils.command.install import INSTALL_SCHEMES + for scheme in INSTALL_SCHEMES.values(): +- scheme['data'] = scheme['purelib'] ++ scheme['data'] = scheme['purelib'] + + # Importing these adds a 'bdist_mpkg' option that allows building binary packages on OS X. + try: +@@ -16,7 +16,7 @@ import scipy + if hasattr(scipy, 'Numeric'): + # Using old scipy + import scipy_distutils.core as core +- data_files = [('SloppyCell/ReactionNetworks', ++ data_files = [('SloppyCell/ReactionNetworks', + ['ReactionNetworks/f2py_signatures.pyf', + 'ReactionNetworks/f2py_signatures_no_derivs.pyf', + 'ReactionNetworks/mtrand.h', +@@ -55,19 +55,21 @@ if hasattr(os, 'link'): + # on CCMR, it seems (very slightly), faster to use the included ones rather + # than linking against LAPACK. + daskr = core.Extension(name = 'SloppyCell._daskr', +- sources = ['daskr.pyf', 'ddaskr/ddaskr.f', +- 'ddaskr/daux.f', 'ddaskr/dlinpk.f']) ++ sources = ['daskr.pyf', 'ddaskr/ddaskr.f', ++ 'ddaskr/daux.f', 'ddaskr/dlinpk.f'], ++ extra_link_args = ['-shared']) + + misc_c = core.Extension(name = 'SloppyCell.misc_c', +- sources = ['misc_c.c', 'misc_c.pyf']) ++ sources = ['misc_c.c', 'misc_c.pyf'], ++ extra_link_args = ['-shared']) + + core.setup(name='SloppyCell', + version='CVS', + author='Ryan Gutenkunst', + author_email='rng7@cornell.edu', + url='http://sloppycell.sourceforge.net', +- packages=['SloppyCell', +- 'SloppyCell.ReactionNetworks', ++ packages=['SloppyCell', ++ 'SloppyCell.ReactionNetworks', + 'SloppyCell.Testing', + 'SloppyCell.ExprManip', + 'SloppyCell.Vandermonde', |