diff options
-rw-r--r-- | .SRCINFO | 8 | ||||
-rw-r--r-- | PKGBUILD | 26 |
2 files changed, 19 insertions, 15 deletions
@@ -1,8 +1,8 @@ pkgbase = r-deseq2 pkgdesc = Differential gene expression analysis based on the negative binomial distribution. - pkgver = 1.34.0 + pkgver = 1.36.0 pkgrel = 1 - url = https://bioconductor.org/packages/release/bioc/html/DESeq2.html + url = https://bioconductor.org/packages/DESeq2 arch = x86_64 license = LGPL3 depends = r @@ -10,7 +10,7 @@ pkgbase = r-deseq2 depends = r-iranges depends = r-genomicranges depends = r-summarizedexperiment - source = https://bioconductor.org/packages/release/bioc/src/contrib/DESeq2_1.34.0.tar.gz - sha1sums = 2316fc43f8a114cb515998a39fc2a46ed4a6a07a + source = https://bioconductor.org/packages/release/bioc/src/contrib/DESeq2_1.36.0.tar.gz + sha1sums = 5a2890897a509174af3a95030fc50658cdc8e2fe pkgname = r-deseq2 @@ -1,20 +1,24 @@ -# Maintainer: Charles Vejnar +# Maintainer: Charles Vejnar <first name [dot] last name [at] gmail [dot] com> -pkgname=r-deseq2 -_bc_name=DESeq2 -pkgver=1.34.0 +_pkgname=DESeq2 +pkgname=r-${_pkgname,,} +pkgver=1.36.0 pkgrel=1 pkgdesc="Differential gene expression analysis based on the negative binomial distribution." -url="https://bioconductor.org/packages/release/bioc/html/DESeq2.html" +url="https://bioconductor.org/packages/DESeq2" arch=("x86_64") license=("LGPL3") -depends=("r" "r-s4vectors" "r-iranges" "r-genomicranges" "r-summarizedexperiment") -source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bc_name}_${pkgver}.tar.gz") -sha1sums=("2316fc43f8a114cb515998a39fc2a46ed4a6a07a") +depends=('r' + 'r-s4vectors' + 'r-iranges' + 'r-genomicranges' + 'r-summarizedexperiment') +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${pkgver}.tar.gz") +sha1sums=('5a2890897a509174af3a95030fc50658cdc8e2fe') package() { - mkdir -p $pkgdir/usr/lib/R/library - cd $srcdir + mkdir -p "$pkgdir/usr/lib/R/library" + cd "$srcdir" - R CMD INSTALL -l $pkgdir/usr/lib/R/library ./${_bc_name} + R CMD INSTALL -l "$pkgdir/usr/lib/R/library" ./${_pkgname} } |