diff options
| -rw-r--r-- | .SRCINFO | 14 | ||||
| -rw-r--r-- | PKGBUILD | 38 |
2 files changed, 32 insertions, 20 deletions
@@ -1,29 +1,31 @@ pkgbase = r-dose pkgdesc = Disease Ontology Semantic and Enrichment analysis - pkgver = 3.28.0 + pkgver = 3.28.1 pkgrel = 1 url = https://bioconductor.org/packages/DOSE arch = any license = Artistic2.0 - depends = r + checkdepends = r-testthat depends = r-annotationdbi depends = r-biocparallel depends = r-fgsea depends = r-ggplot2 depends = r-gosemsim depends = r-hdo.db - depends = r-hpo.db - depends = r-mpo.db depends = r-qvalue depends = r-reshape2 + depends = r-yulab.utils optdepends = r-clusterprofiler optdepends = r-gson + optdepends = r-hpo.db optdepends = r-knitr + optdepends = r-mpo.db optdepends = r-org.hs.eg.db optdepends = r-prettydoc optdepends = r-rmarkdown optdepends = r-testthat - source = https://bioconductor.org/packages/release/bioc/src/contrib/DOSE_3.28.0.tar.gz - sha256sums = 9e6b7edb00748f605aaa0175fb038dacaa64aadef208e72975a0093ef55739f6 + source = https://bioconductor.org/packages/release/bioc/src/contrib/DOSE_3.28.1.tar.gz + md5sums = 11096edb2862c8a442f53435082e40b6 + sha256sums = 77e86745c3ce54f36a79c35a3c5a6fa1f86090a10b66b0a5647f2d2c842db10a pkgname = r-dose @@ -1,45 +1,55 @@ -# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> +# Contributor: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=DOSE -_pkgver=3.28.0 +_pkgver=3.28.1 pkgname=r-${_pkgname,,} -pkgver=3.28.0 +pkgver=${_pkgver//-/.} pkgrel=1 -pkgdesc='Disease Ontology Semantic and Enrichment analysis' -arch=('any') +pkgdesc="Disease Ontology Semantic and Enrichment analysis" +arch=(any) url="https://bioconductor.org/packages/${_pkgname}" -license=('Artistic2.0') +license=(Artistic2.0) depends=( - r r-annotationdbi r-biocparallel r-fgsea r-ggplot2 r-gosemsim r-hdo.db - r-hpo.db - r-mpo.db r-qvalue r-reshape2 + r-yulab.utils +) +checkdepends=( + r-testthat ) optdepends=( r-clusterprofiler r-gson + r-hpo.db r-knitr + r-mpo.db r-org.hs.eg.db r-prettydoc r-rmarkdown r-testthat ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('9e6b7edb00748f605aaa0175fb038dacaa64aadef208e72975a0093ef55739f6') +md5sums=('11096edb2862c8a442f53435082e40b6') +sha256sums=('77e86745c3ce54f36a79c35a3c5a6fa1f86090a10b66b0a5647f2d2c842db10a') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" } -# vim:set ts=2 sw=2 et: |