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-rw-r--r-- | .SRCINFO | 32 | ||||
-rw-r--r-- | PKGBUILD | 48 |
2 files changed, 80 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..c3c7699a7226 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,32 @@ +pkgbase = r-enmcb + pkgdesc = Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models + pkgver = 1.8.1 + pkgrel = 1 + url = https://bioconductor.org/packages/EnMCB + arch = any + license = GPL + depends = r + depends = r-doparallel + depends = r-foreach + depends = r-ggplot2 + depends = r-glmnet + depends = r-illuminahumanmethylation450kanno.ilmn12.hg19 + depends = r-mboost + depends = r-minfi + depends = r-rms + depends = r-survivalroc + depends = r-survivalsvm + depends = r-igraph + optdepends = r-affycoretools + optdepends = r-biobase + optdepends = r-knitr + optdepends = r-plotroc + optdepends = r-prognosticroc + optdepends = r-rmarkdown + optdepends = r-summarizedexperiment + optdepends = r-survminer + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/EnMCB_1.8.1.tar.gz + sha256sums = 129e5a18c4051e618778b15b32a6ebe8105896ad1eca45c23ed534e2de220543 + +pkgname = r-enmcb diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..75c77522d952 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,48 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=EnMCB +_pkgver=1.8.1 +pkgname=r-${_pkgname,,} +pkgver=1.8.1 +pkgrel=1 +pkgdesc='Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-doparallel + r-foreach + r-ggplot2 + r-glmnet + r-illuminahumanmethylation450kanno.ilmn12.hg19 + r-mboost + r-minfi + r-rms + r-survivalroc + r-survivalsvm + r-igraph +) +optdepends=( + r-affycoretools + r-biobase + r-knitr + r-plotroc + r-prognosticroc + r-rmarkdown + r-summarizedexperiment + r-survminer + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('129e5a18c4051e618778b15b32a6ebe8105896ad1eca45c23ed534e2de220543') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |