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-rw-r--r-- | .SRCINFO | 23 | ||||
-rw-r--r-- | PKGBUILD | 46 |
2 files changed, 69 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..bfe8963c215f --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,23 @@ +pkgbase = r-enrichviewnet + pkgdesc = From functional enrichment results to biological networks + pkgver = 1.0.0 + pkgrel = 1 + url = https://bioconductor.org/packages/enrichViewNet + arch = any + license = Artistic2.0 + checkdepends = r-testthat + depends = r-enrichplot + depends = r-gprofiler2 + depends = r-jsonlite + depends = r-rcy3 + depends = r-strex + depends = r-stringr + optdepends = r-biocstyle + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/enrichViewNet_1.0.0.tar.gz + md5sums = 5b2eb51ee4f57abd3b77da182e7e5d1a + sha256sums = 9b7bdd6591da9e94251ed4599287814b53ccae5eeace8c5fd689e9818160e510 + +pkgname = r-enrichviewnet diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..4c2485604e09 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,46 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=enrichViewNet +_pkgver=1.0.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="From functional enrichment results to biological networks" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(Artistic2.0) +depends=( + r-enrichplot + r-gprofiler2 + r-jsonlite + r-rcy3 + r-strex + r-stringr +) +checkdepends=( + r-testthat +) +optdepends=( + r-biocstyle + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('5b2eb51ee4f57abd3b77da182e7e5d1a') +sha256sums=('9b7bdd6591da9e94251ed4599287814b53ccae5eeace8c5fd689e9818160e510') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} |