diff options
-rw-r--r-- | .SRCINFO | 25 | ||||
-rw-r--r-- | PKGBUILD | 42 |
2 files changed, 40 insertions, 27 deletions
@@ -1,16 +1,16 @@ pkgbase = r-escape pkgdesc = Easy single cell analysis platform for enrichment - pkgver = 1.12.0 + pkgver = 2.0.0 pkgrel = 1 url = https://bioconductor.org/packages/escape arch = any - license = Apache - depends = r + license = MIT + depends = r-aucell depends = r-biocparallel - depends = r-broom - depends = r-data.table depends = r-dplyr + depends = r-ggdist depends = r-ggplot2 + depends = r-ggpointdensity depends = r-ggridges depends = r-gseabase depends = r-gsva @@ -18,20 +18,25 @@ pkgbase = r-escape depends = r-msigdbr depends = r-patchwork depends = r-reshape2 - depends = r-rlang + depends = r-seuratobject depends = r-singlecellexperiment depends = r-stringr depends = r-summarizedexperiment depends = r-ucell optdepends = r-biocstyle - optdepends = r-dittoseq + optdepends = r-hexbin optdepends = r-knitr optdepends = r-markdown + optdepends = r-rcolorbrewer + optdepends = r-rlang optdepends = r-rmarkdown + optdepends = r-scran optdepends = r-seurat - optdepends = r-seuratobject + optdepends = r-spelling optdepends = r-testthat - source = https://bioconductor.org/packages/release/bioc/src/contrib/escape_1.12.0.tar.gz - sha256sums = d69dda267e9346b1d3f10274fb0985409d23060abba609d4e8859eae92b1b12e + optdepends = r-vdiffr + source = https://bioconductor.org/packages/release/bioc/src/contrib/escape_2.0.0.tar.gz + md5sums = 7b3c16032574ae1639cf3d8b0f4eda1a + b2sums = 85b0342930e2971515787fbd0739062c8a8faecb6a8bb7a73b93c9fe8c79994c90a4b8fa3f3cf0919e155f3cd316d6afc15f5e55335cd49b93cbd7ebadacc5bd pkgname = r-escape @@ -1,21 +1,21 @@ # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=escape -_pkgver=1.12.0 +_pkgver=2.0.0 pkgname=r-${_pkgname,,} -pkgver=1.12.0 +pkgver=${_pkgver//-/.} pkgrel=1 -pkgdesc='Easy single cell analysis platform for enrichment' -arch=('any') -url="https://bioconductor.org/packages/${_pkgname}" -license=('Apache') +pkgdesc="Easy single cell analysis platform for enrichment" +arch=(any) +url="https://bioconductor.org/packages/$_pkgname" +license=('MIT') depends=( - r + r-aucell r-biocparallel - r-broom - r-data.table r-dplyr + r-ggdist r-ggplot2 + r-ggpointdensity r-ggridges r-gseabase r-gsva @@ -23,7 +23,7 @@ depends=( r-msigdbr r-patchwork r-reshape2 - r-rlang + r-seuratobject r-singlecellexperiment r-stringr r-summarizedexperiment @@ -31,23 +31,31 @@ depends=( ) optdepends=( r-biocstyle - r-dittoseq + r-hexbin r-knitr r-markdown + r-rcolorbrewer + r-rlang r-rmarkdown + r-scran r-seurat - r-seuratobject + r-spelling r-testthat + r-vdiffr ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('d69dda267e9346b1d3f10274fb0985409d23060abba609d4e8859eae92b1b12e') +md5sums=('7b3c16032574ae1639cf3d8b0f4eda1a') +b2sums=('85b0342930e2971515787fbd0739062c8a8faecb6a8bb7a73b93c9fe8c79994c90a4b8fa3f3cf0919e155f3cd316d6afc15f5e55335cd49b93cbd7ebadacc5bd') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir build + R CMD INSTALL -l build "$_pkgname" } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" } -# vim:set ts=2 sw=2 et: |