diff options
| -rw-r--r-- | .SRCINFO | 10 | ||||
| -rw-r--r-- | PKGBUILD | 8 |
2 files changed, 11 insertions, 7 deletions
@@ -1,10 +1,10 @@ pkgbase = r-genomeinfodb pkgdesc = Utilities for manipulating chromosome names, including modifying them to follow a particular naming style - pkgver = 1.38.7 + pkgver = 1.38.8 pkgrel = 1 url = https://bioconductor.org/packages/release/bioc/html/GenomeInfoDb.html arch = any - license = Artistic2.0 + license = Artistic-2.0 depends = r>=4.0.0 depends = r-biocgenerics>=0.37.0 depends = r-s4vectors>=0.25.12 @@ -16,6 +16,7 @@ pkgbase = r-genomeinfodb optdepends = r-bsgenome.celegans.ucsc.ce2 optdepends = r-bsgenome.hsapiens.ncbi.grch38 optdepends = r-bsgenome.scerevisiae.ucsc.saccer2 + optdepends = r-data.table optdepends = r-genomicalignments optdepends = r-genomicfeatures optdepends = r-genomicranges @@ -23,7 +24,8 @@ pkgbase = r-genomeinfodb optdepends = r-rsamtools optdepends = r-runit optdepends = r-txdb.dmelanogaster.ucsc.dm3.ensgene - source = https://bioconductor.org/packages/release/bioc/src/contrib/GenomeInfoDb_1.38.7.tar.gz - b2sums = 2b015fdde7dacc64987a771ee031410b635cf917bd820abdc3a0d1d08b9fd4a8a6fc800b8e932478dd30e7f3247d910dbacebe741e427a3c38378b10a217edb1 + optdepends = r-r.utils + source = https://bioconductor.org/packages/release/bioc/src/contrib/GenomeInfoDb_1.38.8.tar.gz + b2sums = 25fc978b257f74375504a1639fe2a1c15dcbf089134472fe33e1add1399c4f0b80e497ba898816db6fe2846f81186bbeb1e0ea62f8baa9b806f27db1de70d7c6 pkgname = r-genomeinfodb @@ -3,14 +3,14 @@ # Contributor: Grey Christoforo <first name at last name dot net> _bcname=GenomeInfoDb -_bcver=1.38.7 +_bcver=1.38.8 pkgname="r-${_bcname,,}" pkgver="${_bcver//[:-]/.}" pkgrel=1 pkgdesc="Utilities for manipulating chromosome names, including modifying them to follow a particular naming style" arch=("any") url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html" -license=("Artistic2.0") +license=("Artistic-2.0") depends=( "r>=4.0.0" @@ -26,6 +26,7 @@ optdepends=( "r-bsgenome.celegans.ucsc.ce2" "r-bsgenome.hsapiens.ncbi.grch38" "r-bsgenome.scerevisiae.ucsc.saccer2" + "r-data.table" "r-genomicalignments" "r-genomicfeatures" "r-genomicranges" @@ -33,6 +34,7 @@ optdepends=( "r-rsamtools" "r-runit" "r-txdb.dmelanogaster.ucsc.dm3.ensgene" + "r-r.utils" ) # The unittests for `r-pkgcache` have circular @@ -55,7 +57,7 @@ optdepends=( # ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz") -b2sums=('2b015fdde7dacc64987a771ee031410b635cf917bd820abdc3a0d1d08b9fd4a8a6fc800b8e932478dd30e7f3247d910dbacebe741e427a3c38378b10a217edb1') +b2sums=("25fc978b257f74375504a1639fe2a1c15dcbf089134472fe33e1add1399c4f0b80e497ba898816db6fe2846f81186bbeb1e0ea62f8baa9b806f27db1de70d7c6") build() { mkdir -p "${srcdir}/build/" |