diff options
| -rw-r--r-- | .SRCINFO | 36 | ||||
| -rw-r--r-- | PKGBUILD | 53 |
2 files changed, 89 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..56393144b2c5 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,36 @@ +pkgbase = r-h5vc + pkgdesc = Managing alignment tallies using a hdf5 backend + pkgver = 2.30.0 + pkgrel = 1 + url = https://bioconductor.org/packages/h5vc + arch = x86_64 + license = GPL + depends = r + depends = r-abind + depends = r-batchjobs + depends = r-biocparallel + depends = r-biostrings + depends = r-genomeinfodb + depends = r-genomicranges + depends = r-ggplot2 + depends = r-gridextra + depends = r-h5vcdata + depends = r-iranges + depends = r-reshape + depends = r-rhdf5 + depends = r-rhtslib + depends = r-rsamtools + depends = r-s4vectors + depends = make + optdepends = r-biocgenerics + optdepends = r-biomart + optdepends = r-bsgenome.hsapiens.ncbi.grch38 + optdepends = r-bsgenome.hsapiens.ucsc.hg19 + optdepends = r-knitr + optdepends = r-locfit + optdepends = r-rmarkdown + optdepends = r-runit + source = https://bioconductor.org/packages/release/bioc/src/contrib/h5vc_2.30.0.tar.gz + sha256sums = 0713f368e1aa0bbcf00a01130c8c9083efaa115b63859f8b74ba28e216717b07 + +pkgname = r-h5vc diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..81bca5faf3fe --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,53 @@ +# system requirements: GNU make +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=h5vc +_pkgver=2.30.0 +pkgname=r-${_pkgname,,} +pkgver=2.30.0 +pkgrel=1 +pkgdesc='Managing alignment tallies using a hdf5 backend' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-abind + r-batchjobs + r-biocparallel + r-biostrings + r-genomeinfodb + r-genomicranges + r-ggplot2 + r-gridextra + r-h5vcdata + r-iranges + r-reshape + r-rhdf5 + r-rhtslib + r-rsamtools + r-s4vectors + make +) +optdepends=( + r-biocgenerics + r-biomart + r-bsgenome.hsapiens.ncbi.grch38 + r-bsgenome.hsapiens.ucsc.hg19 + r-knitr + r-locfit + r-rmarkdown + r-runit +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('0713f368e1aa0bbcf00a01130c8c9083efaa115b63859f8b74ba28e216717b07') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |